BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0253600 Os01g0253600|AK058837
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18590.1  | chr4:10236524-10236940 FORWARD LENGTH=107          126   2e-30
AT3G52630.1  | chr3:19514184-19514596 FORWARD LENGTH=108          123   2e-29

>AT4G18590.1 | chr4:10236524-10236940 FORWARD LENGTH=107
          Length = 106

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 80/106 (75%)

Query: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60
           MDTS PAAFVNG +L+ ++G++VR V+Q  R + G +IG+STD  Q+ +KG+   P++ Y
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106
           +E+IGIAE +  IRAEV T+FG++FD   +N LCKLANG+ + LF+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106



>AT3G52630.1 | chr3:19514184-19514596 FORWARD LENGTH=108
          Length = 107

 Score =  123 bits (308), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 80/107 (74%), Gaps = 1/107 (0%)

Query: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASG-APMSH 59
           MDTS P+AFVNG +L+ F+G++VRTV+Q    E G ++G+STD  Q+ ++G+S  +P++ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 60  YVEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106
           Y+E+IGIAE + AIRAE  T+FG  FD   +N LCKLANG+ K LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,326,086
Number of extensions: 83639
Number of successful extensions: 134
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)