Os01g0253400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1218 family protein.
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Os01g0253400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1218 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.89 | 0.605 | 4.78 | -2.9 | 2.23 | 1.46 | -1.66 | 4.03 | -0.421 | 8.73 | 1.03 | 4279 | -- | -- |
| 175.31 | 0.617 | 4.7 | -2.24 | 2.25 | 0.989 | -1.38 | -- | -0.303 | 8.66 | 2.34 | 7091 | -- | -- |
| 171.4 | 0.61 | 4.78 | -3.04 | 2.39 | 1.44 | -- | 4.27 | -0.418 | 9.03 | 1.519 | 4394 | -- | -- |
| 173.61 | 0.614 | 4.68 | -2.15 | 2.22 | 0.97 | -- | -- | -0.227 | 8.74 | 2.698 | 15706 | -- | -- |
| 298.59 | 0.805 | 4.76 | -2.9 | -- | 3.55 | -- | 4.09 | -0.0974 | -- | 2.279 | 5315 | -- | -- |
| 191.28 | 0.648 | 4.72 | -2.41 | 2.31 | -- | -1.37 | -- | -0.458 | 8.87 | -- | -- | -- | -- |
| 197.65 | 0.658 | 4.72 | -2.46 | 2.32 | -- | -- | -- | -0.458 | 8.87 | -- | -- | -- | -- |
| 297.62 | 0.803 | 4.67 | -1.89 | -- | 3.42 | -- | -- | 0.09 | -- | 3.232 | 5313 | -- | -- |
| 194.7 | 0.65 | 4.52 | -- | 2.3 | 1.98 | -- | -- | 0.447 | 8.82 | 0.95 | 47520 | -- | -- |
| 503.59 | 1.05 | 4.79 | -2.46 | -- | -- | -- | -- | -0.442 | -- | -- | -- | -- | -- |
| 356.77 | 0.884 | 4.66 | -- | 2.31 | -- | -- | -- | -0.185 | 8.95 | -- | -- | -- | -- |
| 379.35 | 0.907 | 4.61 | -- | -- | 3.95 | -- | -- | 0.338 | -- | 2.19 | 5323 | -- | -- |
| 662.8 | 1.2 | 4.72 | -- | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.85 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 2 | 153.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 3 | 153.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 5 | 154.30 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 6 | 154.45 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 9 | 155.08 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 10 | 155.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 12 | 155.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 17 |
| 14 | 155.45 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 31 | 155.79 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 71 | 156.59 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 79 | 156.74 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 90 | 156.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 181 | 158.00 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 187 | 158.07 | humidity | 90.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 189 | 158.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 212 | 158.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 215 | 158.44 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 224 | 158.51 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 228 | 158.57 | humidity | 90.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 230 | 158.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 239 | 158.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 271 | 159.03 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 289 | 159.17 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 293 | 159.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 315 | 159.39 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 324 | 159.45 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 328 | 159.47 | wind | 3.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 334 | 159.50 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 351 | 159.61 | wind | 3.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 354 | 159.62 | wind | 3.0 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 355 | 159.63 | wind | 3.0 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 357 | 159.64 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 374 | 159.75 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 378 | 159.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 381 | 159.78 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 382 | 159.78 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 389 | 159.81 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 403 | 159.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 415 | 159.93 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 418 | 159.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 432 | 160.01 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 439 | 160.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 449 | 160.08 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 462 | 160.13 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 465 | 160.13 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 471 | 160.15 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 484 | 160.18 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 485 | 160.18 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 488 | 160.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 497 | 160.21 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 510 | 160.23 | wind | 3.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 530 | 160.27 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 538 | 160.29 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 552 | 160.30 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 11 | 8 |
| 687 | 160.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 709 | 160.56 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 715 | 160.58 | wind | 3.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 756 | 160.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 763 | 160.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 775 | 160.67 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 793 | 160.70 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 809 | 160.75 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 857 | 160.82 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 883 | 160.87 | atmosphere | 1000.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 906 | 160.92 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 922 | 160.96 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 1 |