Os01g0252200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0252200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.49 | 0.324 | 7.72 | 0.365 | 0.79 | -1.59 | -0.789 | 0.418 | -0.0599 | 7.7 | 17.04 | 114 | -- | -- |
| 47.63 | 0.321 | 7.73 | 0.298 | 0.781 | -1.6 | -0.784 | -- | -0.0783 | 7.62 | 16.63 | 121 | -- | -- |
| 49.22 | 0.327 | 7.72 | 0.344 | 0.788 | -1.58 | -- | 0.422 | -0.0574 | 7.8 | 17.1 | 113 | -- | -- |
| 49.38 | 0.327 | 7.73 | 0.284 | 0.792 | -1.62 | -- | -- | -0.0733 | 7.82 | 16.64 | 112 | -- | -- |
| 66.5 | 0.38 | 7.7 | 0.7 | -- | -1.87 | -- | 1.55 | 0.0571 | -- | 18.97 | 369 | -- | -- |
| 79.67 | 0.418 | 7.78 | -0.0691 | 1.1 | -- | -0.687 | -- | -0.327 | 6.11 | -- | -- | -- | -- |
| 80.83 | 0.421 | 7.78 | -0.076 | 1.1 | -- | -- | -- | -0.325 | 6.1 | -- | -- | -- | -- |
| 67.79 | 0.383 | 7.73 | 0.393 | -- | -1.92 | -- | -- | 0.00639 | -- | 17.55 | 367 | -- | -- |
| 51.26 | 0.333 | 7.74 | -- | 0.804 | -1.46 | -- | -- | -0.122 | 7.64 | 17.1 | 113 | -- | -- |
| 143.17 | 0.559 | 7.8 | -0.0448 | -- | -- | -- | -- | -0.3 | -- | -- | -- | -- | -- |
| 80.98 | 0.421 | 7.78 | -- | 1.1 | -- | -- | -- | -0.316 | 6.1 | -- | -- | -- | -- |
| 71.24 | 0.393 | 7.74 | -- | -- | -1.66 | -- | -- | -0.058 | -- | 19.75 | 373 | -- | -- |
| 143.22 | 0.559 | 7.8 | -- | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 2 | 47.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 8 | 47.92 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 22 | 48.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 23 | 48.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 31 | 48.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 32 | 48.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 35 | 48.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 37 | 48.99 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 64 | 49.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 78 | 49.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 147 | 50.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 164 | 51.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 267 | 52.19 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 278 | 52.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 281 | 52.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 366 | 52.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 16 |
| 437 | 53.04 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 458 | 53.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 463 | 53.12 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 533 | 53.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 538 | 53.35 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 547 | 53.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 623 | 53.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 660 | 53.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 5 |
| 860 | 54.07 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 872 | 54.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 920 | 54.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 930 | 54.16 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 948 | 54.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 960 | 54.20 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 991 | 54.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 998 | 54.24 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 2 |