BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0252200 Os01g0252200|AK071420
(274 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576 58 5e-09
AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485 58 7e-09
AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344 51 6e-07
AT2G02650.1 | chr2:735411-736546 FORWARD LENGTH=366 50 1e-06
AT4G04650.1 | chr4:2353989-2355213 REVERSE LENGTH=333 48 6e-06
>AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576
Length = 575
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 18/192 (9%)
Query: 80 DKIVWKLTSHGEYKATSAY---------KAQLLGTTATNFNIL---IWKPWAPRKCKTFA 127
D W TS G+Y S Y ++ + + N + IWK K + F
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270
Query: 128 WLIIQNRVWTSDRLATRGWQNNSFCPLCRHTQETALHLLAECRYTRKIWAALSDWTRCGQ 187
W + N + + LA R S C C +ET HLL +C + R WA S G
Sbjct: 271 WKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLG- 329
Query: 188 LNPGQWQPAQSV-LEWWEATANLKEVPKKALRTLTLLVNWEIWNERNRRIFQHKELSTGS 246
G+W + V L W N +KA + + L+ W +W RN +F+ +E +
Sbjct: 330 ---GEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLL-WRLWKNRNELVFRGREFNAQE 385
Query: 247 LLAKIKEEAKTW 258
+L + +++ + W
Sbjct: 386 VLRRAEDDLEEW 397
>AT3G09510.1 | chr3:2921804-2923258 FORWARD LENGTH=485
Length = 484
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 22/228 (9%)
Query: 54 WTTELVSQLINV--WSAVHNVHFTENEE-DKIVWKLTSHGEYKATSAY-----------K 99
W +SQ ++ +H ++ ++++ DKI+W + GEY S Y
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 100 AQLLGTTATNFNILIWK-PWAPRKCKTFAWLIIQNRVWTSDRLATRGWQNNSFCPLCRHT 158
A + + IW P P K K F W + + T++RL TRG + + CP C
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMP-KLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRE 206
Query: 159 QETALHLLAECRYTRKIWAALSDWTRC-GQLNPGQWQPAQSVLEWWEATANLKEVPKKAL 217
E+ H L C + W LSD + QL ++ S + + + + K
Sbjct: 207 NESINHALFTCPFATMAW-RLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK--- 262
Query: 218 RTLTLLVNWEIWNERNRRIFQHKELSTGSLLAKIKEEAKTWSRAGARH 265
L + + W IW RN +F S + K E W A H
Sbjct: 263 -LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSH 309
>AT3G25270.1 | chr3:9203934-9204965 REVERSE LENGTH=344
Length = 343
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 5/145 (3%)
Query: 114 IWKPWAPRKCKTFAWLIIQNRVWTSDRLATRGWQNNSFCPLCRHTQETALHLLAECRYTR 173
IWK K K F W ++ + T D L R +N+ C C ET+ HL +C Y +
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 174 KIWAALSDWTRCGQLNPGQWQPAQSVLEWWEATANLKEVPKKALRTLTLLVNWEIWNERN 233
++W A S G + L AN + L L + + W +W RN
Sbjct: 78 QVWRA-SGIPHQELRTTGITMETKMELLLSSCLANR----QPQLFNLAIWILWRLWKSRN 132
Query: 234 RRIFQHKELSTGSLLAKIKEEAKTW 258
+ +FQ K +S + L + + + + W
Sbjct: 133 QLVFQQKSISWQNTLQRARNDVQEW 157
>AT2G02650.1 | chr2:735411-736546 FORWARD LENGTH=366
Length = 365
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 10/152 (6%)
Query: 114 IWKPWAPRKCKTFAWLIIQNRVWTSDRLATRGWQNNSFCPLCRHTQETALHLLAECRYTR 173
IWK K K F W + + T+ RL +R + C C +ET H++ C YT+
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 174 KIWAALSDWTRCGQLNPG-QWQPAQSVLEWWEATANLK--EVPKKALRTLTLLVNWEIWN 230
+W R + G QW P S + L + R L + W +W
Sbjct: 97 SVW-------RSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWK 149
Query: 231 ERNRRIFQHKELSTGSLLAKIKEEAKTWSRAG 262
RN +FQ K S K ++A W A
Sbjct: 150 SRNVFLFQQKCQSPDYEARKGIQDATEWLNAN 181
>AT4G04650.1 | chr4:2353989-2355213 REVERSE LENGTH=333
Length = 332
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 13/180 (7%)
Query: 78 EEDKIVWKLTSHG---EYKATSAYKAQLLGTTATNFNILIWKPWAPRKCKTFAWLIIQNR 134
+D +WK H + A + A + ++ +W K W++ NR
Sbjct: 94 HDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNR 153
Query: 135 VWTSDRLATRGWQNNSFCPLCRHTQETALHLLAECRYTRKIWAALSDWTRCGQLNPGQWQ 194
+ T DRL G + C LC ++ HL EC+++ +W + T LNP
Sbjct: 154 LHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTAST---NLNP---- 206
Query: 195 PAQ--SVLEWWEATANLKEVPKKALRTLTLLVNWEIWNERNRRIFQHKELSTGSLLAKIK 252
PAQ L W + + K + +R + IW ERN+R+ ST S+L I+
Sbjct: 207 PAQLMDCLNWLLSPSREKNI-CLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQ 265
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.130 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,280,990
Number of extensions: 241086
Number of successful extensions: 584
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 11
Length of query: 274
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,447,217
Effective search space: 1495157409
Effective search space used: 1495157409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)