Os01g0250300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0250300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.92 | 0.523 | 7.1 | -0.25 | 0.876 | -1.3 | 0.902 | 4.5 | 0.775 | 8.99 | 7.933 | 3252 | -- | -- |
| 131.86 | 0.535 | 7.2 | -0.893 | 0.902 | -1.65 | 0.854 | -- | 0.739 | 8.91 | 0.5704 | 10247 | -- | -- |
| 126.38 | 0.524 | 7.1 | -0.219 | 0.892 | -1.3 | -- | 4.46 | 0.778 | 8.77 | 9.818 | 3141 | -- | -- |
| 134.24 | 0.54 | 7.2 | -0.87 | 0.907 | -1.66 | -- | -- | 0.739 | 8.73 | -1.607 | 10251 | -- | -- |
| 168.2 | 0.604 | 7.13 | -0.211 | -- | -1.48 | -- | 4.22 | 0.793 | -- | 11.2 | 3600 | -- | -- |
| 176.37 | 0.623 | 7.32 | -1.87 | 0.914 | -- | 0.926 | -- | 0.22 | 9.13 | -- | -- | -- | -- |
| 179.28 | 0.627 | 7.32 | -1.84 | 0.916 | -- | -- | -- | 0.22 | 8.96 | -- | -- | -- | -- |
| 177.63 | 0.621 | 7.22 | -0.87 | -- | -1.74 | -- | -- | 0.764 | -- | 8.526 | 9475 | -- | -- |
| 144.51 | 0.56 | 7.12 | -- | 0.869 | -2.06 | -- | -- | 1.1 | 8.81 | -0.09745 | 15166 | -- | -- |
| 227.34 | 0.705 | 7.34 | -1.84 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 268.75 | 0.767 | 7.27 | -- | 0.914 | -- | -- | -- | 0.425 | 9.11 | -- | -- | -- | -- |
| 187.38 | 0.638 | 7.14 | -- | -- | -2.1 | -- | -- | 1.12 | -- | -60 | 15167 | -- | -- |
| 316.96 | 0.831 | 7.3 | -- | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 21 |
| 2 | 113.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 19 |
| 18 | 114.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 20 |
| 19 | 114.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 21 | 114.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 28 | 114.19 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 36 | 114.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 42 | 114.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 43 | 114.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 45 | 114.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 70 | 114.64 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 129 | 115.46 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 152 | 115.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 159 | 116.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 19 |
| 165 | 116.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 176 | 116.20 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 180 | 116.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 181 | 116.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 186 | 116.25 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 188 | 116.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 196 | 116.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 273 | 116.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 299 | 116.86 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 320 | 116.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 358 | 117.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 360 | 117.23 | humidity | 90 | 14400 | > th | dose independent | sin | 16 | NA |
| 399 | 117.55 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 439 | 117.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 460 | 117.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 465 | 117.96 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 491 | 118.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 22 |
| 572 | 118.76 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 21 |
| 579 | 118.82 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 602 | 118.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 607 | 118.99 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 621 | 119.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 630 | 119.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 632 | 119.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 635 | 119.13 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 643 | 119.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 652 | 119.18 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 655 | 119.19 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 660 | 119.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 680 | 119.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 712 | 119.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 738 | 119.50 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 740 | 119.51 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 750 | 119.55 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 789 | 119.71 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 808 | 119.78 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 823 | 119.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 834 | 119.88 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 840 | 119.90 | humidity | 90 | 14400 | < th | dose independent | sin | 17 | NA |
| 848 | 119.94 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |
| 894 | 120.13 | wind | 3 | 43200 | > th | dose independent | sin | 3 | NA |
| 909 | 120.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 916 | 120.22 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 18 |