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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0248000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Stigma-specific protein Stig1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0145) R2 : 0.0168
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0855 (0.0306) R2dN8 : 0.0217 R2N8 : 0.0168
σ : 0.274
deviance : 34.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.79 0.269 2.79 0.00886 0.184 -0.108 -0.574 0.504 0.0785 9.14 7.218 8 -- --
33.4 0.269 2.79 0.021 0.172 -0.099 -0.0507 -- 0.0826 9.05 5.951 3 -- --
33.24 0.269 2.79 0.00964 0.162 -0.0823 -- 0.181 0.0837 8.59 5.821 5 -- --
33.37 0.269 2.79 0.0204 0.181 -0.106 -- -- 0.0825 9.22 5.23 3 -- --
34.23 0.272 2.79 0.0207 -- -0.0135 -- 0.163 0.0896 -- 6.33 6 -- --
33.52 0.271 2.79 0.0245 0.113 -- -0.309 -- 0.0846 5.93 -- -- -- --
33.73 0.272 2.79 0.0226 0.113 -- -- -- 0.0861 6.63 -- -- -- --
34.37 0.274 2.79 0.0243 -- -0.014 -- -- 0.0878 -- 6.33 6 -- --
33.38 0.269 2.79 -- 0.184 -0.109 -- -- 0.0809 9.25 5.231 3 -- --
34.4 0.274 2.79 0.0253 -- -- -- -- 0.0883 -- -- -- -- --
33.74 0.272 2.79 -- 0.113 -- -- -- 0.0835 6.61 -- -- -- --
34.39 0.274 2.79 -- -- -0.0144 -- -- 0.0851 -- 6.33 6 -- --
34.41 0.274 2.79 -- -- -- -- -- 0.0855 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.46 temperature 25.0 30 > th dose independent rect. 4 1
4 29.47 humidity 90.0 10 < th dose independent rect. 4 1
6 29.48 temperature 25.0 90 > th dose dependent rect. 4 1
9 29.59 wind 1.0 30 > th dose dependent rect. 4 1
11 29.66 temperature 25.0 90 > th dose independent rect. 2 3
17 29.74 wind 1.0 30 > th dose independent rect. 4 1
29 29.86 humidity 90.0 90 < th dose dependent rect. 4 1
31 29.88 atmosphere 1005.0 30 > th dose dependent rect. 4 1
35 29.96 atmosphere 1005.0 30 > th dose independent rect. 4 1
37 29.97 wind 3.0 30 < th dose independent rect. 4 1
42 29.98 wind 7.0 1440 < th dose independent rect. 5 1
44 29.98 temperature 10.0 30 > th dose independent rect. 4 1
46 29.98 temperature 10.0 1440 > th dose independent rect. 5 1
49 29.98 temperature 30.0 30 < th dose independent rect. 4 1
50 29.98 temperature 30.0 1440 < th dose independent rect. 5 1
54 29.98 humidity 50.0 30 > th dose independent rect. 4 1
58 29.98 humidity 50.0 1440 > th dose independent rect. 5 1
67 29.98 atmosphere 995.0 30 > th dose independent rect. 4 1
69 29.98 atmosphere 995.0 1440 > th dose independent rect. 5 1
70 29.98 atmosphere 1010.0 30 < th dose independent rect. 4 1
72 29.98 atmosphere 1015.0 1440 < th dose independent rect. 5 1
73 29.98 radiation 1.0 30 < th dose independent rect. 4 1
78 29.98 radiation 20.0 1440 < th dose independent rect. 5 1
87 29.98 precipitation 0.1 30 < th dose independent rect. 4 1
88 29.98 temperature 10.0 30 > th dose independent rect. 5 23
89 29.98 temperature 10.0 1440 > th dose independent rect. 6 23
92 29.98 wind 5.0 30 < th dose dependent rect. 4 1
95 29.98 temperature 10.0 30 > th dose dependent rect. 4 1
97 29.98 humidity 50.0 30 > th dose dependent rect. 4 1
99 29.98 radiation 1.0 30 < th dose dependent rect. 4 1
104 29.98 precipitation 0.1 30 < th dose dependent rect. 4 1
113 30.00 atmosphere 1015.0 30 < th dose dependent rect. 4 1
117 30.01 temperature 30.0 30 < th dose dependent rect. 4 1
125 30.05 humidity 90.0 10 < th dose dependent rect. 4 1
150 30.08 atmosphere 995.0 30 > th dose independent rect. 5 23
175 30.26 precipitation 0.1 30 < th dose independent rect. 5 23
176 30.26 precipitation 0.1 30 < th dose dependent rect. 5 23
178 30.35 wind 9.0 30 < th dose independent rect. 5 23
184 30.38 atmosphere 1005.0 270 > th dose dependent rect. 1 3
195 30.60 temperature 30.0 30 < th dose independent rect. 5 23
196 30.61 radiation 10.0 10 > th dose independent rect. 6 1
222 30.61 radiation 10.0 10 > th dose dependent rect. 6 1
301 31.37 humidity 50.0 30 > th dose independent rect. 5 23
303 31.37 atmosphere 1005.0 10 > th dose dependent rect. 2 5
344 31.70 wind 3.0 30 < th dose dependent rect. 6 1
349 31.73 atmosphere 1005.0 30 > th dose dependent rect. 6 1
402 31.96 humidity 80.0 30 > th dose dependent rect. 6 1
456 32.04 atmosphere 1015.0 30 < th dose independent rect. 5 23
475 32.08 wind 1.0 30 > th dose independent rect. 5 23
476 32.08 temperature 30.0 30 < th dose dependent rect. 6 1
512 32.15 atmosphere 1005.0 10 > th dose independent rect. 4 3
514 32.15 temperature 30.0 10 > th dose dependent rect. 11 1
516 32.15 temperature 30.0 90 > th dose dependent rect. 10 2
518 32.16 humidity 90.0 270 < th dose independent rect. 1 1
536 32.19 atmosphere 1005.0 270 > th dose independent rect. 1 4
555 32.21 wind 3.0 30 < th dose independent rect. 6 1
600 32.25 atmosphere 1010.0 10 < th dose independent rect. 5 6
679 32.31 wind 9.0 1440 < th dose independent rect. 7 1
680 32.31 temperature 25.0 10 > th dose independent rect. 6 1
682 32.31 temperature 10.0 1440 > th dose independent rect. 7 1
686 32.31 temperature 30.0 1440 < th dose independent rect. 7 1
690 32.31 humidity 50.0 1440 > th dose independent rect. 7 1
695 32.31 atmosphere 995.0 1440 > th dose independent rect. 7 1
696 32.31 atmosphere 1015.0 1440 < th dose independent rect. 7 1
705 32.31 temperature 10.0 1440 > th dose independent rect. 8 23
711 32.32 atmosphere 1005.0 30 > th dose independent rect. 6 1
726 32.33 humidity 80.0 30 > th dose independent rect. 6 1
727 32.33 humidity 90.0 30 < th dose independent rect. 6 1
735 32.34 wind 1.0 30 > th dose independent rect. 6 1
739 32.34 temperature 10.0 30 > th dose independent rect. 6 1
741 32.34 temperature 30.0 30 < th dose independent rect. 6 1
742 32.34 humidity 50.0 30 > th dose independent rect. 6 1
745 32.34 atmosphere 995.0 30 > th dose independent rect. 6 1
746 32.34 atmosphere 1015.0 30 < th dose independent rect. 6 1
747 32.34 radiation 20.0 30 < th dose independent rect. 6 1
750 32.34 precipitation 0.1 30 < th dose independent rect. 6 1
752 32.34 temperature 10.0 30 > th dose independent rect. 7 23
753 32.34 precipitation 0.1 30 < th dose dependent rect. 6 1
839 32.39 wind 3.0 30 < th dose dependent rect. 4 3
860 32.42 temperature 10.0 30 > th dose dependent rect. 6 1
876 32.44 wind 9.0 30 < th dose independent rect. 7 23
886 32.45 radiation 40.0 30 < th dose dependent rect. 6 1
893 32.46 temperature 25.0 720 > th dose independent rect. 19 10
910 32.47 temperature 30.0 30 < th dose independent rect. 7 21
913 32.47 temperature 30.0 10 > th dose dependent sin 7 NA
915 32.47 radiation 20.0 10 < th dose dependent rect. 6 1
977 32.50 temperature 25.0 720 > th dose independent rect. 20 2
994 32.51 temperature 30.0 90 > th dose independent rect. 10 2
999 32.51 temperature 30.0 720 < th dose independent rect. 17 12