BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0248000 Os01g0248000|AK073588
(135 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11925.1 | chr1:4026195-4026617 REVERSE LENGTH=141 73 4e-14
AT1G50720.1 | chr1:18789180-18789644 REVERSE LENGTH=155 69 6e-13
AT4G26880.1 | chr4:13508265-13508723 REVERSE LENGTH=153 60 3e-10
AT5G55110.1 | chr5:22367870-22368361 FORWARD LENGTH=164 60 4e-10
AT1G50650.1 | chr1:18763773-18764297 REVERSE LENGTH=175 54 2e-08
AT1G53130.1 | chr1:19794947-19795453 REVERSE LENGTH=169 46 7e-06
>AT1G11925.1 | chr1:4026195-4026617 REVERSE LENGTH=141
Length = 140
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 56 KPPSVCLEPGSPGATCCKGACVDTGSSFAHCGSCNHVCKYGETCCGGHCVDLLSDRKNCG 115
K VC GSPG CC+ CVD ++ +CG C C+Y E CC G+CV+ + DR++CG
Sbjct: 61 KSSKVCRLKGSPGRNCCRKKCVDLRTNKLNCGRCGKSCQYSEVCCNGYCVNPMFDRRHCG 120
Query: 116 DCFVRCPS-KKCSFGLCDYA 134
CF +C + C++G+C YA
Sbjct: 121 GCFKKCKKGRSCAYGMCSYA 140
>AT1G50720.1 | chr1:18789180-18789644 REVERSE LENGTH=155
Length = 154
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 34 RQSRFLA-SAKNSPPLSYYDCKRKPPSVCLEPGSPGAT--CCKGACVDTGSSFAHCGSCN 90
R SRFLA +AKN L+ D K +C G +T CC CVD +CG+C
Sbjct: 50 RVSRFLAQNAKNGRNLNAADHCNKEEEICKSQGMYNSTMACCSNKCVDLAYDNDNCGACK 109
Query: 91 HVCKYGETCCGGHCVDLLSDRKNCGDCFVRCPSKK-CSFGLCDYA 134
+ CK+ +TCC G CV L D+++CG+C C + C +GLC+YA
Sbjct: 110 NQCKFTQTCCRGECVYLAYDKRHCGECNHSCLVGEFCVYGLCNYA 154
>AT4G26880.1 | chr4:13508265-13508723 REVERSE LENGTH=153
Length = 152
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 34 RQSRFLASAK--NSPPLSYYDCKRKPPSVCLEPGSPGA----TCCKGACVDTGSSFAHCG 87
R +R LA + P + C R P +C G G+ TCC C+D S +CG
Sbjct: 46 RPNRLLAQKEVGERNPNAADHCNRNP-EICTPYGGGGSNSTMTCCNNKCIDVSSDDNNCG 104
Query: 88 SCNHVCKYGETCCGGHCVDLLSDRKNCGDCFVRCP-SKKCSFGLCDYA 134
+C + CK+ +TCC G CV + D+++CG C C + C +GLC+YA
Sbjct: 105 ACKNKCKFSQTCCRGQCVYVAYDKRHCGQCNHPCELGEFCVYGLCNYA 152
>AT5G55110.1 | chr5:22367870-22368361 FORWARD LENGTH=164
Length = 163
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 31 IRRRQSRFLASA-------KNSPPLSYYDCKRKPPSVCLEPGSPGAT----CCKGACVDT 79
I+ R SRFLA K P + C + S GA CC C+D
Sbjct: 48 IKIRPSRFLAEKVDKGKEPKARNPNAADHCNKDNEICSSSDYSTGANATMACCNNKCMDL 107
Query: 80 GSSFAHCGSCNHVCKYGETCCGGHCVDLLSDRKNCGDCFVRCP-SKKCSFGLCDYA 134
+ +CG C + CK+G+TCC G CV + D+++CG+C RC + C +GLC+YA
Sbjct: 108 STDDKNCGLCKNKCKFGQTCCRGQCVYVAYDKRHCGECNHRCDLGEFCVYGLCNYA 163
>AT1G50650.1 | chr1:18763773-18764297 REVERSE LENGTH=175
Length = 174
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 46 PPL-SYYDCKRKPPSVCLEPGSPGATCCKGACVDTGSSFAHCGSCNHVCKYGETCCGGHC 104
PP+ + CKR PS CC+ CVD S HC C C++ +CC G C
Sbjct: 54 PPMCKPWICKRSGPS------EARMRCCRNQCVDVLSDPNHCRFCFKSCRFALSCCDGDC 107
Query: 105 VDLLSDRKNCGDCFVRCPS-KKCSFGLCDYAG 135
VD +D NCG C C S C FG+C YA
Sbjct: 108 VDTNTDPSNCGQCGNECESGAPCEFGMCGYAA 139
>AT1G53130.1 | chr1:19794947-19795453 REVERSE LENGTH=169
Length = 168
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 63 EPGSPGATCCKGACVDTGSSFAHCGSCNHVCKYGETCCGGHCVDLLSDRKNCGDCFVRCP 122
G+ CCK C + +CG C H C +G+ CCGG C + + +CG C +C
Sbjct: 96 NKGTSLLHCCKKHCRNVLGDRNNCGRCGHKCGFGQRCCGGVCTYVNFNPNHCGKCTRKCA 155
Query: 123 S-KKCSFGLCDYA 134
S KC +G C YA
Sbjct: 156 SGVKCEYGYCGYA 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.503
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,926,733
Number of extensions: 125839
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 6
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)