FiT-DB / Search/ Help/ Sample detail

Os01g0241100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.31 (0.0139) R2 : 0.386
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.584 (0.0348) R2dC : 0.378 R2C : 0.379
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0609 (0.0294) R2dN8 : 0.00748 R2N8 : 0.00813
σ : 0.263
deviance : 31.62
__
_____
C
peak time of C : 15.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.22 0.25 9.29 0.145 0.611 -0.396 0.167 0.803 0.0309 15 20.04 4549 -- --
29.01 0.251 9.29 0.128 0.622 -0.374 0.113 -- 0.0317 15.1 20.23 4643 -- --
28.27 0.248 9.29 0.142 0.616 -0.409 -- 0.805 0.0326 15.1 20.01 4643 -- --
29.08 0.251 9.29 0.123 0.635 -0.389 -- -- 0.0186 15.1 20 4656 -- --
44.96 0.314 9.31 -0.0474 -- 0.22 -- 0.634 -0.0722 -- 20.01 4643 -- --
31.42 0.263 9.31 0.0173 0.583 -- 0.242 -- -0.0598 15.1 -- -- -- --
31.61 0.263 9.31 0.0225 0.584 -- -- -- -0.0584 15.1 -- -- -- --
46.9 0.32 9.31 -0.0335 -- 0.236 -- -- -0.0775 -- 20.01 4643 -- --
28.88 0.25 9.29 -- 0.621 -0.352 -- -- 0.00196 15.2 22.72 4643 -- --
51.1 0.334 9.31 -0.00237 -- -- -- -- -0.0736 -- -- -- -- --
31.62 0.263 9.31 -- 0.584 -- -- -- -0.0609 15.1 -- -- -- --
46.93 0.32 9.31 -- -- 0.234 -- -- -0.0738 -- 20.01 4643 -- --
51.1 0.334 9.31 -- -- -- -- -- -0.0733 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.20 humidity 60 90 > th dose dependent rect. 5 22
4 27.27 humidity 70 90 > th dose independent rect. 5 22
14 27.49 radiation 20 90 < th dose dependent rect. 5 22
23 27.65 humidity 60 270 > th dose dependent rect. 5 18
28 27.72 wind 3 14400 > th dose independent rect. 22 19
30 27.73 wind 3 14400 < th dose independent rect. 21 20
35 27.74 temperature 20 270 > th dose independent rect. 10 19
36 27.74 wind 3 14400 < th dose dependent rect. 8 4
40 27.76 humidity 50 43200 < th dose independent rect. 16 17
43 27.76 wind 3 14400 < th dose dependent rect. 6 6
45 27.78 wind 3 14400 < th dose independent rect. 6 6
46 27.78 wind 3 14400 < th dose independent rect. 6 8
48 27.78 radiation 10 270 < th dose independent rect. 5 20
65 27.81 humidity 50 43200 > th dose independent rect. 16 17
68 27.81 temperature 10 270 > th dose dependent rect. 21 9
71 27.82 wind 3 14400 > th dose independent rect. 6 8
91 27.85 radiation 10 270 < th dose independent rect. 5 18
95 27.86 humidity 50 43200 < th dose independent rect. 16 13
105 27.87 wind 3 14400 > th dose independent rect. 6 6
111 27.88 humidity 50 43200 < th dose independent rect. 16 6
120 27.89 wind 1 14400 > th dose independent rect. 11 1
121 27.89 humidity 50 43200 > th dose independent rect. 16 13
125 27.90 wind 3 14400 > th dose independent sin 4 NA
126 27.90 wind 1 43200 < th dose independent rect. 20 3
129 27.90 humidity 50 43200 > th dose independent rect. 16 8
138 27.91 wind 3 14400 < th dose independent sin 3 NA
139 27.91 wind 1 14400 < th dose independent rect. 11 1
140 27.91 humidity 50 43200 > th dose independent rect. 16 6
146 27.91 wind 3 14400 > th dose independent rect. 1 15
162 27.92 wind 3 14400 < th dose independent rect. 1 15
164 27.92 temperature 20 30 > th dose independent rect. 10 23
172 27.94 wind 1 43200 < th dose independent rect. 22 1
180 27.94 temperature 10 270 > th dose dependent rect. 10 19
210 27.98 wind 3 14400 > th dose independent rect. 15 18
234 28.00 wind 3 14400 < th dose independent rect. 15 21
236 28.00 radiation 20 270 < th dose dependent rect. 5 18
246 28.01 temperature 20 30 > th dose independent rect. 10 20
253 28.02 wind 3 14400 > th dose independent sin 12 NA
255 28.02 wind 1 43200 > th dose independent rect. 22 2
256 28.02 wind 1 43200 > th dose independent rect. 20 3
263 28.02 wind 3 14400 < th dose independent rect. 15 18
271 28.02 radiation 40 30 < th dose independent rect. 5 22
321 28.05 wind 1 14400 < th dose dependent rect. 11 1
346 28.08 wind 3 14400 < th dose independent sin 12 NA
347 28.08 radiation 20 4320 > th dose independent rect. 11 1
353 28.08 wind 3 14400 > th dose independent rect. 18 13
413 28.11 wind 3 14400 < th dose independent no NA NA
415 28.11 wind 1 14400 > th dose independent rect. 8 4
444 28.12 wind 3 14400 < th dose dependent rect. 8 1
445 28.12 wind 1 43200 < th dose dependent rect. 22 2
446 28.12 wind 1 43200 < th dose dependent rect. 20 4
447 28.12 wind 5 14400 < th dose dependent rect. 21 20
448 28.12 wind 3 14400 < th dose dependent rect. 19 21
452 28.13 wind 3 14400 > th dose independent no NA NA
460 28.13 temperature 20 30 > th dose dependent rect. 23 7
470 28.14 wind 3 14400 < th dose independent rect. 18 13
494 28.15 wind 1 43200 < th dose dependent rect. 18 6
509 28.16 humidity 70 270 > th dose independent rect. 5 18
514 28.16 wind 3 14400 < th dose independent rect. 3 23
515 28.16 wind 3 14400 < th dose independent rect. 5 23
534 28.17 wind 3 14400 < th dose independent rect. 1 23
536 28.17 wind 3 14400 < th dose independent rect. 8 23
538 28.17 wind 3 14400 < th dose dependent sin 2 NA
569 28.19 wind 3 14400 > th dose independent rect. 1 23
591 28.20 wind 3 14400 > th dose independent rect. 3 23
612 28.21 wind 3 14400 > th dose independent rect. 8 23
634 28.22 wind 3 14400 < th dose dependent rect. 15 21
645 28.23 humidity 50 43200 < th dose dependent rect. 16 1
678 28.25 humidity 70 1440 > th dose independent rect. 11 1
722 28.26 humidity 60 43200 < th dose dependent rect. 16 16
726 28.26 wind 3 14400 < th dose dependent rect. 4 22
741 28.27 wind 3 14400 < th dose dependent no NA NA
755 28.27 wind 3 14400 < th dose dependent rect. 1 23
757 28.27 wind 3 14400 < th dose dependent rect. 6 23
758 28.27 wind 3 14400 < th dose dependent rect. 8 23
771 28.28 humidity 60 43200 < th dose dependent rect. 16 13
815 28.29 wind 3 14400 < th dose dependent rect. 23 23
817 28.30 humidity 70 1440 < th dose independent rect. 11 1
836 28.30 humidity 60 43200 < th dose dependent rect. 16 7
843 28.30 radiation 10 43200 < th dose dependent rect. 15 14
872 28.31 radiation 10 43200 < th dose dependent rect. 15 5
912 28.32 wind 3 14400 < th dose dependent rect. 10 23
913 28.32 temperature 10 10 > th dose dependent rect. 10 23
921 28.33 radiation 40 270 < th dose independent rect. 5 18
924 28.33 radiation 20 4320 > th dose dependent rect. 11 1
962 28.35 humidity 70 43200 > th dose independent rect. 18 16
966 28.35 humidity 60 1440 > th dose dependent rect. 10 3
976 28.35 humidity 70 43200 < th dose dependent rect. 18 12
978 28.35 wind 9 270 < th dose dependent rect. 5 15
996 28.36 humidity 70 1440 > th dose independent rect. 10 3
999 28.36 wind 3 14400 > th dose independent rect. 19 9