BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0241100 Os01g0241100|J065178A13
         (141 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28130.1  | chr2:11988823-11991397 FORWARD LENGTH=459           64   2e-11

>AT2G28130.1 | chr2:11988823-11991397 FORWARD LENGTH=459
          Length = 458

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 1   MLLDEPLDFEKEDPLL-PKARPAKRKKVIGLDDLLEDFFASGKDDLKAYGIESKHGSKGY 59
           M LD PLDFE EDPL+ P     KRKKVIGLDDLL DF+      +     + +  SK Y
Sbjct: 1   MDLDGPLDFENEDPLVNPPTIIEKRKKVIGLDDLLSDFYKEKSKVIDKVN-KKRKVSKVY 59

Query: 60  NSXXXXXXXXXXXXXXXXXXXXYEEQSKELDAGDDVPQWGQRVFGCQKSPSVLTVTGVEN 119
           +S                     + Q  E+   ++  +WG  +FG QK+P    +  +++
Sbjct: 60  HSDDDEQGQVDKLSQCVVEC---QNQMNEIADEEENQEWGLSMFGDQKTPIPSLLVDLDS 116

Query: 120 CQLLKSFCANE-HLGFDLNIEQG 141
           C LLK F  N+ +L   L +++G
Sbjct: 117 CCLLKEFMNNQLNLVVGLTVDEG 139



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,943,596
Number of extensions: 107459
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 106 (45.4 bits)