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Os01g0241000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.29 (0.0344) R2 : 0.645
β1 : 1.23 (0.126) R2dD : 0.0738 R2D : 0.0254
β2 : 3.04 (0.14) R2dC : 1.1 R2C : -1.06
β3 : -3.21 (0.121) R2dE : 1.61 R2E : -0.58
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.662 (0.0734) R2dN8 : 0.0821 R2N8 : 0.0299
σ : 0.643
deviance : 190.52
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_____
C
peak time of C : 24
E
wheather : wind
threshold : 7.298
memory length : 295
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 13.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.57 0.642 8.29 1.17 2.85 -3 -0.686 -0.379 0.63 0.161 7.1 280 12.2 13.7
186.23 0.636 8.3 1.14 2.93 -3.1 -1.12 -- 0.629 0.0636 7.11 290 12.2 13.6
186.72 0.636 8.3 1.18 2.86 -3.02 -- -0.943 0.618 0.131 7.17 288 12.2 13.6
190.52 0.643 8.29 1.23 3.04 -3.21 -- -- 0.662 24 7.298 295 12.1 13.6
295.79 0.801 8.26 1.08 -- -1.45 -- -1.01 0.548 -- 8.576 52 11.6 14
243.87 0.732 8.21 1.01 2.15 -- 0.814 -- 0.568 5.96 -- -- -- --
245.43 0.734 8.21 1.02 2.16 -- -- -- 0.564 5.9 -- -- -- --
299.4 0.806 8.25 1.06 -- -1.44 -- -- 0.553 -- 8.5 52 11.6 14
226.87 0.702 8.32 -- 3.09 -3.24 -- -- 0.523 23.8 7.599 290 12.2 13.5
486.92 1.03 8.24 1.08 -- -- -- -- 0.614 -- -- -- -- --
272.61 0.772 8.23 -- 2.17 -- -- -- 0.451 5.88 -- -- -- --
328.61 0.844 8.26 -- -- -1.46 -- -- 0.483 -- 8.7 55 11.5 14
517.71 1.06 8.27 -- -- -- -- -- 0.494 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.32 wind 7.0 270 < th dose independent rect. 12 14
2 189.74 wind 7.0 270 < th dose independent rect. 21 20
3 192.85 humidity 60.0 270 > th dose independent rect. 16 5
4 192.99 radiation 10.0 270 < th dose independent rect. 16 5
8 194.41 humidity 90.0 270 < th dose independent rect. 17 4
11 194.74 radiation 10.0 270 < th dose independent rect. 9 12
13 195.32 wind 7.0 720 < th dose independent rect. 6 10
15 195.52 radiation 10.0 270 < th dose independent rect. 13 8
21 196.51 temperature 30.0 270 < th dose independent rect. 17 4
30 197.24 radiation 10.0 270 < th dose independent sin 20 NA
42 198.44 radiation 20.0 270 < th dose dependent rect. 16 5
43 198.72 wind 7.0 720 < th dose independent rect. 5 12
57 199.34 humidity 50.0 14400 > th dose independent rect. 19 6
75 200.45 temperature 10.0 270 > th dose dependent rect. 17 4
77 200.50 temperature 15.0 90 > th dose dependent rect. 18 6
94 201.36 humidity 60.0 270 > th dose independent rect. 16 19
107 201.86 wind 7.0 270 < th dose independent rect. 11 6
114 202.08 atmosphere 995.0 270 > th dose independent rect. 17 4
118 202.17 precipitation 0.1 270 < th dose independent rect. 17 4
119 202.17 precipitation 0.1 270 < th dose dependent rect. 17 4
121 202.20 radiation 40.0 270 < th dose dependent rect. 16 19
126 202.36 radiation 40.0 270 < th dose dependent rect. 16 21
132 202.59 radiation 40.0 43200 < th dose independent rect. 16 3
136 202.76 temperature 10.0 270 > th dose independent rect. 17 4
140 202.76 temperature 10.0 270 > th dose independent rect. 21 20
142 202.82 wind 1.0 270 > th dose independent rect. 17 4
148 203.04 humidity 50.0 14400 > th dose independent rect. 19 3
162 203.56 temperature 30.0 270 < th dose independent rect. 16 19
166 203.63 atmosphere 1015.0 270 < th dose independent rect. 17 4
169 203.66 radiation 40.0 43200 < th dose independent rect. 16 13
192 204.23 wind 9.0 270 < th dose independent rect. 17 4
199 204.38 temperature 20.0 270 > th dose independent rect. 18 2
212 204.68 precipitation 0.1 270 < th dose independent rect. 2 10
213 204.68 precipitation 0.1 270 < th dose dependent rect. 2 10
215 204.74 radiation 40.0 270 < th dose dependent rect. 7 14
224 204.95 temperature 30.0 90 < th dose independent rect. 18 17
225 204.95 radiation 20.0 270 < th dose dependent rect. 7 14
231 205.10 precipitation 0.1 270 < th dose independent rect. 21 20
232 205.10 precipitation 0.1 270 < th dose dependent rect. 21 20
234 205.14 radiation 40.0 43200 < th dose independent rect. 16 15
249 205.24 atmosphere 995.0 270 > th dose dependent rect. 17 4
254 205.28 wind 9.0 270 < th dose dependent rect. 11 6
255 205.35 wind 1.0 270 > th dose dependent rect. 17 4
256 205.36 precipitation 0.1 270 < th dose independent rect. 18 2
257 205.36 precipitation 0.1 270 < th dose dependent rect. 18 2
272 205.63 wind 1.0 270 > th dose independent rect. 18 2
275 205.67 radiation 40.0 270 < th dose independent rect. 16 21
281 205.73 humidity 70.0 10 > th dose independent rect. 18 6
286 205.77 atmosphere 995.0 270 > th dose independent rect. 18 2
314 205.97 temperature 10.0 90 > th dose independent rect. 23 19
318 206.05 temperature 10.0 270 > th dose independent rect. 18 2
320 206.05 atmosphere 1015.0 270 < th dose independent rect. 18 2
325 206.05 temperature 10.0 270 > th dose independent rect. 20 22
330 206.08 humidity 90.0 90 < th dose independent rect. 18 12
339 206.19 wind 9.0 270 < th dose independent rect. 18 2
340 206.20 precipitation 0.1 270 < th dose independent rect. 16 6
341 206.20 precipitation 0.1 270 < th dose dependent rect. 16 6
344 206.24 temperature 30.0 10 < th dose independent rect. 18 6
367 206.45 temperature 10.0 270 > th dose independent rect. 2 10
368 206.45 atmosphere 995.0 270 > th dose independent rect. 2 10
369 206.45 atmosphere 1015.0 270 < th dose independent rect. 2 10
370 206.45 temperature 10.0 270 > th dose independent rect. 12 14
380 206.54 temperature 10.0 270 > th dose independent rect. 16 6
390 206.62 wind 7.0 720 < th dose independent rect. 5 20
394 206.65 radiation 20.0 270 < th dose independent rect. 16 21
402 206.73 atmosphere 995.0 270 > th dose dependent rect. 18 2
404 206.74 radiation 40.0 270 < th dose dependent sin 18 NA
409 206.78 radiation 10.0 14400 > th dose dependent rect. 6 1
434 206.97 wind 1.0 270 > th dose independent rect. 16 6
436 206.98 radiation 10.0 90 < th dose dependent sin 16 NA
454 207.15 atmosphere 1015.0 90 < th dose independent rect. 23 19
463 207.21 atmosphere 1015.0 270 < th dose independent rect. 21 20
467 207.24 humidity 50.0 270 > th dose independent rect. 2 10
483 207.37 precipitation 0.1 90 < th dose independent rect. 23 19
484 207.37 precipitation 0.1 90 < th dose dependent rect. 23 19
487 207.41 radiation 40.0 90 < th dose independent rect. 18 19
495 207.49 wind 1.0 90 > th dose dependent rect. 18 7
504 207.57 radiation 20.0 43200 < th dose dependent rect. 19 6
505 207.58 wind 9.0 270 < th dose independent rect. 2 10
506 207.58 temperature 30.0 90 < th dose independent rect. 18 19
518 207.67 wind 9.0 720 < th dose independent rect. 6 17
545 207.83 radiation 40.0 270 < th dose independent rect. 16 19
561 207.95 temperature 10.0 30 > th dose dependent sin 17 NA
573 208.02 radiation 1.0 270 > th dose dependent rect. 11 22
579 208.07 radiation 20.0 14400 < th dose independent rect. 19 11
587 208.14 radiation 10.0 4320 < th dose dependent rect. 19 6
600 208.26 wind 1.0 270 > th dose dependent rect. 16 7
601 208.26 temperature 20.0 720 > th dose dependent rect. 4 17
642 208.52 atmosphere 995.0 270 > th dose independent rect. 21 20
674 208.76 radiation 1.0 90 > th dose independent sin 18 NA
676 208.76 radiation 1.0 270 > th dose dependent sin 18 NA
685 208.83 radiation 40.0 270 < th dose independent rect. 7 14
739 209.13 temperature 20.0 720 > th dose dependent sin 0 NA
744 209.17 radiation 1.0 4320 < th dose dependent rect. 1 5
749 209.19 radiation 1.0 4320 < th dose dependent rect. 3 3
802 209.32 temperature 10.0 1440 > th dose independent rect. 19 6
805 209.32 temperature 30.0 1440 < th dose independent rect. 19 6
809 209.32 humidity 50.0 1440 > th dose independent rect. 19 6
811 209.32 atmosphere 995.0 1440 > th dose independent rect. 19 6
812 209.32 radiation 1.0 1440 < th dose independent rect. 19 6
832 209.32 temperature 10.0 1440 > th dose independent rect. 1 18
864 209.44 wind 9.0 270 < th dose dependent rect. 21 20
929 209.70 wind 9.0 720 < th dose independent sin 4 NA
931 209.71 humidity 60.0 270 > th dose independent rect. 3 18
962 209.87 wind 9.0 270 < th dose dependent rect. 13 2
977 209.93 precipitation 0.1 270 < th dose independent rect. 16 19
978 209.93 precipitation 0.1 270 < th dose dependent rect. 16 19
987 209.97 atmosphere 995.0 270 > th dose independent rect. 22 18
988 209.98 radiation 1.0 10 < th dose dependent rect. 18 6
998 210.05 radiation 20.0 270 > th dose independent rect. 11 22