BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0241000 Os01g0241000|AK119763
         (383 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42760.1  | chr2:17796382-17797185 REVERSE LENGTH=268           61   1e-09

>AT2G42760.1 | chr2:17796382-17797185 REVERSE LENGTH=268
          Length = 267

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 254 KKWKSSSDLESIEVQGFRDLGFVFDQEELRES-LADVLPGLRGKPTPXXXXXXXXXXXXX 312
           +K KS SDLE  E++GF DLGFVF +++ ++S L  +LPGL+                  
Sbjct: 142 RKGKSMSDLEYEELKGFMDLGFVFSEDDHKDSDLVSILPGLQ-------RLVKKDDGVTK 194

Query: 313 XXXXXXXXXXVAAVR--RPYLSEAWYHVXXXXXXXXXXXXXXXXXXXXXSAAE--MKDQL 368
                     +   R  RPYLSEAW H                      +A+E  +KD L
Sbjct: 195 EEEEEEEEDKIGGNRAARPYLSEAWDHCGGRKGKKQITPEIKWRVPAPAAASEVDLKDNL 254

Query: 369 RMWAQAVACNVR 380
           R+WA AVA  +R
Sbjct: 255 RLWAHAVASTIR 266



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,528,173
Number of extensions: 166919
Number of successful extensions: 435
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 283
Effective length of database: 8,364,969
Effective search space: 2367286227
Effective search space used: 2367286227
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)