Os01g0238900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
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Os01g0238900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.21 | 0.241 | 10.7 | 0.217 | 0.228 | -0.693 | -0.00758 | -0.678 | -0.0158 | 5.4 | 22.48 | 1644 | -- | -- |
| 27.56 | 0.244 | 10.7 | 0.0702 | 0.205 | -0.699 | 0.0228 | -- | -0.0673 | 5.61 | 22.6 | 1610 | -- | -- |
| 25.96 | 0.237 | 10.7 | 0.21 | 0.229 | -0.742 | -- | -0.775 | -0.0128 | 5.38 | 22.2 | 1631 | -- | -- |
| 27.29 | 0.243 | 10.7 | -0.00326 | 0.208 | -0.701 | -- | -- | -0.0656 | 5.54 | 22.4 | 1528 | -- | -- |
| 28.35 | 0.248 | 10.7 | 0.222 | -- | -0.749 | -- | -0.78 | -0.00607 | -- | 22.18 | 1479 | -- | -- |
| 46.7 | 0.32 | 10.7 | 0.239 | 0.239 | -- | 0.0033 | -- | 0.172 | 5.36 | -- | -- | -- | -- |
| 46.7 | 0.32 | 10.7 | 0.239 | 0.239 | -- | -- | -- | 0.172 | 5.36 | -- | -- | -- | -- |
| 29.68 | 0.254 | 10.7 | -0.00384 | -- | -0.714 | -- | -- | -0.0679 | -- | 22.4 | 1454 | -- | -- |
| 27.28 | 0.243 | 10.7 | -- | 0.217 | -0.705 | -- | -- | -0.0672 | 5.57 | 22.4 | 1524 | -- | -- |
| 49.68 | 0.329 | 10.7 | 0.247 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 48.2 | 0.325 | 10.7 | -- | 0.243 | -- | -- | -- | 0.145 | 5.32 | -- | -- | -- | -- |
| 29.68 | 0.254 | 10.7 | -- | -- | -0.714 | -- | -- | -0.0682 | -- | 22.39 | 1459 | -- | -- |
| 51.29 | 0.334 | 10.7 | -- | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 6 | 25.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 61 | 26.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 66 | 26.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 82 | 26.76 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 85 | 26.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 106 | 26.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 111 | 26.88 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 182 | 27.00 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 290 | 27.19 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 332 | 27.25 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 335 | 27.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 366 | 27.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 411 | 27.41 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 418 | 27.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 421 | 27.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 428 | 27.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 442 | 27.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 588 | 27.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 721 | 27.76 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 768 | 27.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 788 | 27.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 810 | 27.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 853 | 27.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 933 | 27.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 934 | 27.97 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 953 | 27.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 18 |