BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0238900 Os01g0238900|AK111838
(189 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28450.1 | chr4:14061724-14064582 REVERSE LENGTH=453 295 1e-80
AT5G25150.1 | chr5:8677117-8682058 FORWARD LENGTH=670 55 3e-08
AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334 51 3e-07
AT2G43770.1 | chr2:18134272-18135303 REVERSE LENGTH=344 51 5e-07
AT5G52820.1 | chr5:21401423-21404203 FORWARD LENGTH=474 50 6e-07
AT2G22040.1 | chr2:9374576-9376260 REVERSE LENGTH=314 48 3e-06
AT5G23430.1 | chr5:7894073-7899862 REVERSE LENGTH=838 48 3e-06
AT5G08390.1 | chr5:2701448-2706910 FORWARD LENGTH=840 47 5e-06
>AT4G28450.1 | chr4:14061724-14064582 REVERSE LENGTH=453
Length = 452
Score = 295 bits (754), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 140/189 (74%), Positives = 156/189 (82%)
Query: 1 VNEDTNCYSFDARKLDEAKVVHKGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHS 60
NED +CYSFD RKLDEAK VHK HVSAVMDID+SPTGREFVTGSYDR+VRIF YNG HS
Sbjct: 264 ANEDGSCYSFDGRKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRSVRIFPYNGGHS 323
Query: 61 REIYHTKRMQRVFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQLGVLLPRERRKQEYLDA 120
REIYHTKRMQRVFCVKY+ D TY++SGSDDTNLRLWK+KASEQLGV+LPRE++K EY +A
Sbjct: 324 REIYHTKRMQRVFCVKYSCDATYVISGSDDTNLRLWKAKASEQLGVILPREQKKHEYNEA 383
Query: 121 VKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMIXXXXXXXXXXXXHSAPGSMPVQPFR 180
VK RYKHL EVKRIVRHRHLPKPIYKA + RT+ HSAPG++ P R
Sbjct: 384 VKNRYKHLSEVKRIVRHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLR 443
Query: 181 KRRIIKEVE 189
KR+IIKEVE
Sbjct: 444 KRKIIKEVE 452
>AT5G25150.1 | chr5:8677117-8682058 FORWARD LENGTH=670
Length = 669
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 12 ARKLDEAKVVHKGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIYHTKRMQR 71
+ KL+ V +KGH V D +SP G F + S+DRT RI+ + I +
Sbjct: 446 STKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLRIM-AGHLSD 504
Query: 72 VFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQLGVLL 108
V CV++ + Y+ +GS D +RLW + E + + +
Sbjct: 505 VDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFI 541
>AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334
Length = 333
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 10 FDARKLDEAKVVHKGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIYHTKRM 69
+DAR E V +GH + V ++++P V+GS+D T+RI++ + M
Sbjct: 112 WDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSM 171
Query: 70 QRVFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQLGVLL 108
+ V + DG+ +VS S D + ++W +K L L+
Sbjct: 172 P-ISSVHFNRDGSLIVSASHDGSCKIWDAKEGTCLKTLI 209
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 4 DTNCYSFDARKLDEAKVVHKGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREI 63
D +C +DA++ K + AV +SP G+ + + D T+++ Y ++
Sbjct: 191 DGSCKIWDAKEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKV 250
Query: 64 YHTKRMQRVFCVKYTY---DGTYLVSGSDDTNLRLWKSKASEQLGVLLPRERRKQEYLDA 120
Y T +VFC+ + +G Y+VSGS+D + LW +A L +R + + DA
Sbjct: 251 Y-TGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNIL-------QRLEGHTDA 302
Query: 121 VKERYKHLPEVKRIVRHRHLPKPI 144
V H + + HL K I
Sbjct: 303 VISVSCHPVQNEISSSGNHLDKTI 326
>AT2G43770.1 | chr2:18134272-18135303 REVERSE LENGTH=344
Length = 343
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 15 LDEAKVVHKGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIYHTKRMQRVFC 74
L+ ++ GH SAV + ++P G +GS+DR + +++ +GD + +
Sbjct: 42 LEAPIMLLSGHPSAVYTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILD 101
Query: 75 VKYTYDGTYLVSGSDDTNLRLWKSKASEQL 104
+ +T DG+ +VS S D +R W + +Q+
Sbjct: 102 LHWTSDGSQIVSASPDKTVRAWDVETGKQI 131
>AT5G52820.1 | chr5:21401423-21404203 FORWARD LENGTH=474
Length = 473
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 10 FDARKLDEAKVVHKGHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIYHTKRM 69
F R ++ GH AV+ + +SP G++ +GS D TVR++ ++ T +
Sbjct: 93 FRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDL---YTETPLFTCKG 149
Query: 70 QR--VFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQLGVLLPRERR 113
+ V V ++ DG +LVSGS + W K E G L ++
Sbjct: 150 HKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKK 195
>AT2G22040.1 | chr2:9374576-9376260 REVERSE LENGTH=314
Length = 313
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 1 VNEDTNCYSF----DARKLDEAKVVHK--GHVSAVMDIDYSP-TGREFVTGSYDRTVRIF 53
N+ CY + + + + E + +HK H S ++ SP R T S D+TV+I+
Sbjct: 186 ANDRGTCYVWRSLCERQTMTEFEPLHKLQAHNSHILKCLLSPGNNRYLATASSDKTVKIW 245
Query: 54 QYNGDHSREIYHTKRMQRVFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQ 103
+G ++ T + V+ ++ DG YLV+ S DT RLW +A ++
Sbjct: 246 NLDGFKLEKVL-TGHERWVWDCDFSMDGEYLVTASSDTTARLWSMRAGKE 294
>AT5G23430.1 | chr5:7894073-7899862 REVERSE LENGTH=838
Length = 837
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 15 LDEAKVVHK--GHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIY--HTKRMQ 70
L+EAK+V GH S + +D+ P G F +GS D ++I+ Y HT+
Sbjct: 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR--- 144
Query: 71 RVFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQL 104
V +++T DG ++VSG +D +++W A + L
Sbjct: 145 GVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLL 178
>AT5G08390.1 | chr5:2701448-2706910 FORWARD LENGTH=840
Length = 839
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 15 LDEAKVVHK--GHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGDHSREIY--HTKRMQ 70
L+EAKVV GH S + +++ P G F +GS D ++I+ Y HT+
Sbjct: 88 LEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-- 145
Query: 71 RVFCVKYTYDGTYLVSGSDDTNLRLWKSKASEQL 104
V +++T DG ++VSG +D +++W A + L
Sbjct: 146 -VNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLL 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,023,073
Number of extensions: 157024
Number of successful extensions: 979
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1015
Number of HSP's successfully gapped: 9
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)