Os01g0235200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0235200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.16 | 0.262 | 8.14 | -0.344 | 0.934 | 0.764 | -0.0731 | -0.61 | -0.131 | 5.97 | 24.3 | 88 | -- | -- |
| 31.76 | 0.262 | 8.15 | -0.39 | 0.941 | 0.842 | -0.175 | -- | -0.142 | 5.98 | 24.2 | 95 | -- | -- |
| 31.17 | 0.26 | 8.14 | -0.343 | 0.934 | 0.763 | -- | -0.63 | -0.131 | 5.98 | 24.3 | 86 | -- | -- |
| 31.79 | 0.263 | 8.15 | -0.422 | 0.931 | 0.842 | -- | -- | -0.142 | 5.99 | 24.2 | 96 | -- | -- |
| 59.63 | 0.36 | 8.13 | -0.164 | -- | 1.36 | -- | -0.637 | 0.0103 | -- | 30.66 | 274 | -- | -- |
| 41.31 | 0.301 | 8.18 | -0.621 | 0.991 | -- | -0.218 | -- | -0.288 | 5.54 | -- | -- | -- | -- |
| 41.42 | 0.301 | 8.18 | -0.622 | 0.99 | -- | -- | -- | -0.287 | 5.55 | -- | -- | -- | -- |
| 59.93 | 0.361 | 8.14 | -0.265 | -- | 1.34 | -- | -- | -0.0156 | -- | 30.29 | 275 | -- | -- |
| 36.06 | 0.28 | 8.13 | -- | 0.912 | 1.01 | -- | -- | -0.077 | 6.11 | 24.2 | 103 | -- | -- |
| 92.35 | 0.449 | 8.19 | -0.589 | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
| 51.61 | 0.336 | 8.17 | -- | 0.98 | -- | -- | -- | -0.218 | 5.58 | -- | -- | -- | -- |
| 61.73 | 0.366 | 8.13 | -- | -- | 1.43 | -- | -- | 0.0332 | -- | 30.17 | 278 | -- | -- |
| 101.51 | 0.47 | 8.18 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.72 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 2 | 28.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 3 | 29.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 6 | 29.14 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 25 | 30.00 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 18 |
| 26 | 30.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 32 | 30.21 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 53 | 30.57 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 63 | 30.68 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 5 |
| 75 | 30.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 79 | 30.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 85 | 30.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 95 | 31.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 19 |
| 96 | 31.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 22 |
| 138 | 31.26 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 139 | 31.26 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 163 | 31.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 168 | 31.37 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 169 | 31.37 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 19 |
| 199 | 31.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 249 | 31.64 | radiation | 40 | 30 | < th | dose independent | rect. | 5 | 19 |
| 258 | 31.65 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 259 | 31.66 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 268 | 31.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 269 | 31.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 288 | 31.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 376 | 32.01 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 395 | 32.06 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 6 |
| 399 | 32.06 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 426 | 32.17 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 431 | 32.19 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 19 |
| 436 | 32.21 | humidity | 60 | 30 | > th | dose independent | rect. | 5 | 19 |
| 446 | 32.25 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 473 | 32.34 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 22 |
| 491 | 32.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 492 | 32.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 501 | 32.44 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 10 |
| 513 | 32.46 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 520 | 32.48 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 8 |
| 560 | 32.57 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 5 |
| 571 | 32.59 | wind | 3 | 30 | < th | dose dependent | rect. | 24 | 5 |
| 576 | 32.60 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 627 | 32.69 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 658 | 32.74 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 683 | 32.79 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 8 |
| 694 | 32.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 708 | 32.82 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 14 |
| 741 | 32.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 744 | 32.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 850 | 33.01 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 909 | 33.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 929 | 33.13 | temperature | 25 | 270 | < th | dose dependent | sin | 15 | NA |
| 955 | 33.16 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 963 | 33.17 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 22 | 5 |