Os01g0232700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH). Splice isoform 2.
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Os01g0232700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.52 | 0.28 | 11.5 | -0.643 | 0.717 | 1.16 | 0.00685 | 0.244 | -0.325 | 18.6 | 24.12 | 101 | -- | -- |
| 35.54 | 0.278 | 11.5 | -0.68 | 0.714 | 1.17 | 0.0259 | -- | -0.333 | 18.6 | 24.01 | 109 | -- | -- |
| 35.52 | 0.278 | 11.5 | -0.643 | 0.719 | 1.16 | -- | 0.26 | -0.329 | 18.6 | 24.02 | 101 | -- | -- |
| 35.54 | 0.278 | 11.5 | -0.68 | 0.708 | 1.18 | -- | -- | -0.338 | 18.6 | 24.01 | 109 | -- | -- |
| 50.88 | 0.332 | 11.5 | -0.868 | -- | 1.69 | -- | -0.734 | -0.399 | -- | 24.2 | 265 | -- | -- |
| 57.4 | 0.355 | 11.5 | -0.467 | 1.13 | -- | 0.682 | -- | -0.2 | 17.4 | -- | -- | -- | -- |
| 58.54 | 0.358 | 11.5 | -0.469 | 1.13 | -- | -- | -- | -0.197 | 17.5 | -- | -- | -- | -- |
| 51.15 | 0.333 | 11.5 | -0.773 | -- | 1.62 | -- | -- | -0.389 | -- | 24.11 | 264 | -- | -- |
| 47.11 | 0.321 | 11.5 | -- | 0.865 | 1.02 | -- | -- | -0.238 | 18.6 | 24.37 | 113 | -- | -- |
| 125.44 | 0.523 | 11.5 | -0.507 | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
| 64.34 | 0.375 | 11.5 | -- | 1.14 | -- | -- | -- | -0.144 | 17.4 | -- | -- | -- | -- |
| 66.39 | 0.38 | 11.5 | -- | -- | 1.5 | -- | -- | -0.285 | -- | 24.3 | 264 | -- | -- |
| 132.22 | 0.537 | 11.4 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.32 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 10 | 32.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 13 | 32.82 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 31 | 33.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 55 | 33.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 72 | 33.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 79 | 33.89 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 160 | 34.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 162 | 34.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 183 | 34.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 203 | 35.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 236 | 35.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 326 | 35.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 340 | 35.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 375 | 35.74 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 397 | 35.80 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 407 | 35.81 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 418 | 35.83 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 448 | 35.86 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 652 | 36.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 748 | 36.84 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 6 |
| 753 | 36.86 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 7 |
| 993 | 37.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |