BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0232700 Os01g0232700|AK069972
         (473 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63890.2  | chr5:25565600-25568104 REVERSE LENGTH=467          730   0.0  

>AT5G63890.2 | chr5:25565600-25568104 REVERSE LENGTH=467
          Length = 466

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/434 (79%), Positives = 391/434 (90%)

Query: 36  CAAMKSYRLSELSDAEVGGLKARPRIDFSSIFGTVNPIVEDVRMRGDAAVKDYTVKFDKV 95
           C +MKSYRLSELS ++V  LK+RPRIDFSSIF TVNPI++ VR  GD AVK+YT +FDKV
Sbjct: 29  CCSMKSYRLSELSSSQVDSLKSRPRIDFSSIFATVNPIIDAVRSNGDNAVKEYTERFDKV 88

Query: 96  ALDDVVVRVSDLPDVELDPAVKEAFDVAYDNIYAFHVSQKLPEKTVENMKGVRCKRITRC 155
            L+ VV  +S+L   ELD  VKEAFDVAYDNIYAFH++QK  EK+VENMKGVRCKR++R 
Sbjct: 89  QLNKVVEDMSELSVPELDSNVKEAFDVAYDNIYAFHLAQKSTEKSVENMKGVRCKRVSRS 148

Query: 156 IGSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTVVLATPPSRDGSICKEVLYCAKKAGVT 215
           IGSVGLYVPGGTAVLPSTALMLA+PAQIAGCKTVVLATPPS+DGSICKEVLYCAK+AGVT
Sbjct: 149 IGSVGLYVPGGTAVLPSTALMLAIPAQIAGCKTVVLATPPSKDGSICKEVLYCAKRAGVT 208

Query: 216 HVLKAGGAQAISAMAWGTVSCPKVEKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEV 275
           H+LKAGGAQAI+AMAWGT SCPKVEKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEV
Sbjct: 209 HILKAGGAQAIAAMAWGTDSCPKVEKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEV 268

Query: 276 LVIADKYANPVHVAADLLSQAEHGPDSQXXXXXXXXXXXXXXIEAEVSKQCSALPRGEFA 335
           LVIAD++A+PV++AADLLSQAEHGPDSQ              IE E++KQC +LPRGEFA
Sbjct: 269 LVIADEHASPVYIAADLLSQAEHGPDSQVVLVVVGDSVDLNAIEEEIAKQCKSLPRGEFA 328

Query: 336 SKALGHSFTVFAKDMVEAISFSNMYAPEHLIINVKDAEQWEDLVENAGSVFLGQWTPESV 395
           SKAL HSFTVFA+DM+EAISFSN+YAPEHLIINVKDAE+WE L+ENAGSVF+G WTPESV
Sbjct: 329 SKALSHSFTVFARDMIEAISFSNLYAPEHLIINVKDAEKWEGLIENAGSVFIGPWTPESV 388

Query: 396 GDYASGTNHVLPTYGYARMYSGVSLNSFLKYITVQSLSEEGLRSLGPHVAKMAEVEGLEA 455
           GDYASGTNHVLPTYGYARMYSGVSL+SFLK++TVQSL+EEGLR+LGP+VA MAE+EGL+A
Sbjct: 389 GDYASGTNHVLPTYGYARMYSGVSLDSFLKFMTVQSLTEEGLRNLGPYVATMAEIEGLDA 448

Query: 456 HRRAVTLRLQDIEA 469
           H+RAVTLRL+DIEA
Sbjct: 449 HKRAVTLRLKDIEA 462



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,047,000
Number of extensions: 345864
Number of successful extensions: 777
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 371
Effective length of database: 8,310,137
Effective search space: 3083060827
Effective search space used: 3083060827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)