Os01g0232400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to VHS1 protein (Fragment).
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Os01g0232400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to VHS1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.3 | 0.178 | 11.1 | 0.443 | 0.618 | -0.534 | -0.391 | -0.0355 | 0.115 | 6.15 | 81.95 | 1091 | -- | -- |
| 14.28 | 0.176 | 11.1 | 0.46 | 0.606 | -0.555 | -0.426 | -- | 0.114 | 6.09 | 82 | 1041 | -- | -- |
| 14.67 | 0.178 | 11.1 | 0.439 | 0.616 | -0.527 | -- | -0.015 | 0.118 | 6.19 | 82.39 | 1087 | -- | -- |
| 14.67 | 0.178 | 11.1 | 0.44 | 0.615 | -0.531 | -- | -- | 0.118 | 6.19 | 82.44 | 1087 | -- | -- |
| 20.14 | 0.209 | 11.1 | 0.428 | -- | -0.952 | -- | 0.547 | 0.168 | -- | 104.5 | 582 | -- | -- |
| 19.9 | 0.209 | 11.1 | 0.367 | 0.652 | -- | -0.258 | -- | 0.131 | 6.95 | -- | -- | -- | -- |
| 20.07 | 0.21 | 11.1 | 0.363 | 0.651 | -- | -- | -- | 0.132 | 7 | -- | -- | -- | -- |
| 20.55 | 0.211 | 11.1 | 0.403 | -- | -0.916 | -- | -- | 0.159 | -- | 136.6 | 604 | -- | -- |
| 19.29 | 0.205 | 11.1 | -- | 0.639 | -0.511 | -- | -- | 0.104 | 6.21 | 125.9 | 1124 | -- | -- |
| 42.36 | 0.304 | 11.1 | 0.376 | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
| 23.55 | 0.227 | 11.1 | -- | 0.655 | -- | -- | -- | 0.0917 | 6.96 | -- | -- | -- | -- |
| 24.82 | 0.232 | 11.1 | -- | -- | -0.903 | -- | -- | 0.114 | -- | 184 | 591 | -- | -- |
| 46.09 | 0.317 | 11.1 | -- | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.62 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 4 | 14.64 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 6 | 14.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 12 | 14.68 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 37 | 14.74 | humidity | 90 | 1440 | < th | dose dependent | sin | 21 | NA |
| 68 | 14.79 | humidity | 50 | 1440 | > th | dose dependent | sin | 21 | NA |
| 224 | 14.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 227 | 14.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 263 | 14.88 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 277 | 14.88 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 290 | 14.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 305 | 14.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 340 | 14.93 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 359 | 14.94 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 424 | 14.97 | humidity | 50 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 425 | 14.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 478 | 15.00 | humidity | 70 | 1440 | > th | dose independent | sin | 20 | NA |
| 519 | 15.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 542 | 15.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 577 | 15.04 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 659 | 15.06 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 758 | 15.08 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 796 | 15.09 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 815 | 15.10 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 11 |
| 909 | 15.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 4 |
| 930 | 15.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 958 | 15.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 9 |
| 995 | 15.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 17 |