BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0232400 Os01g0232400|AK101990
         (693 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16270.1  | chr3:5513701-5516540 FORWARD LENGTH=691            595   e-170

>AT3G16270.1 | chr3:5513701-5516540 FORWARD LENGTH=691
          Length = 690

 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 343/714 (48%), Positives = 441/714 (61%), Gaps = 47/714 (6%)

Query: 1   MDQSRRAVESYWRSRMVDGVTADDDKVAPVYKLEEICELLRASDASVVKEVADFVLKRLD 60
           MD SRRAVESYWRSRM+D VT+D+DKVAPVYKLEEIC+LLR+S  S+VKE ++F+LKRLD
Sbjct: 1   MDTSRRAVESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD 60

Query: 61  NKSPVVKQKALRLIKYAVGKSGTDFKREMQRHSAAMRQLVHYKGHPDPLKGDSLNKAVRE 120
           NKSP+VKQKALRLIKYAVGKSG++F+REMQR+S A+R L HYKGHPDPLKGD+LNKAVRE
Sbjct: 61  NKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE 120

Query: 121 TANDAIAAIFSTEEPKPAVATEGLGKRIQGFGNTNFEPSRDDKKSFLSELSEVVGIGSAS 180
           TA++ I+AIFS E      A E + +RI+GFGNTNF+   +D KSF   LSEVVGIGSAS
Sbjct: 121 TAHETISAIFSEENGTKPAAPESINRRIEGFGNTNFQVPSNDNKSF---LSEVVGIGSAS 177

Query: 181 IKQGLSNFAASHSSMITNDNGGPYKSPNLRRSLTTEMDKYGRYDPSEIQGEXXXXXXXXX 240
           IKQG+SNFA  H      +    Y+ PNL RSLT E + + RYDP ++  +         
Sbjct: 178 IKQGISNFAQGHLPKKNENGSSSYRGPNLHRSLTMENENFSRYDPVKLGKDGNYGTSKNT 237

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXQTGVKTREERLLDTIATSSGVRLQPTRDALQIFLTEA 300
                                      KTREE+LL+TI TS GVRLQPTRDAL +F+ EA
Sbjct: 238 TGGSWGHASGEASESSASVRVES----KTREEKLLETIVTSGGVRLQPTRDALHVFILEA 293

Query: 301 AKLDAVALSRALENKLNSPLWQVRMKAICVLEAIVRKQDTDPYSIITSYFCENSASVVRC 360
           AK+DAVALS AL+ KL+SP+WQVRMKA+CVLEAI+RK++ + +SI+ +YF EN  ++ RC
Sbjct: 294 AKMDAVALSIALDGKLHSPMWQVRMKALCVLEAILRKKEDENFSIVHTYFSENLDAIQRC 353

Query: 361 CELPHVSLREKASKVLNLLVGEQPTGSNNFSETKTTVPAA-QMPDLIDTGDQDDP-GAQN 418
            E P  SLREKA+KVL+LL G Q +G  + S+      AA  +PDLIDTGD DD     N
Sbjct: 354 AESPQSSLREKANKVLSLLNGGQSSGLMSSSDNTVKREAAVDLPDLIDTGDSDDTLNNLN 413

Query: 419 SAQEGSERIMGNSMFTSSVDDLLGGEPIADISTTTS-NGNGGDPFADVSFHETADTKDTN 477
           +   GS       +     DD  G    +DI  ++S      DPFADVSFH   + +  +
Sbjct: 414 AIDTGSTVATAGPLMD---DDWFGDS--SDIGLSSSEKKTDDDPFADVSFHPNEEKESAD 468

Query: 478 DLFSGMTVEEKATAALHDSSSINKNELSDIFGSSPEPFFQERVEDKGTVNDLMAGLNLNG 537
           DLFSGMTV EK+ A        +  +L D+FGS+ +   +   +D   +NDLM   +++ 
Sbjct: 469 DLFSGMTVGEKSAAV----GGNHVPDLFDMFGSTAK--LEAEPKDAKNINDLMGSFSIDE 522

Query: 538 TAQAQPGIKTESNNTVNVSQLFDMNSQTTNVANSAAMTGILGQ---SFYQQQQVP---LQ 591
               Q G    S+++     LF M S T++ A    + GILG     F Q   +P   + 
Sbjct: 523 NNSNQKG----SSSSTLPQDLFAMPSTTSHQAPENPVGGILGSQNPGFIQNTMLPGGVMP 578

Query: 592 YNLPSQMLLNPAFAGQQLNYGAMSVXXXXXXXXXXXXXXXXXXXXHSSLNAMNSGNA--- 648
           +N P  M++NPAFA Q LNY AM+                       +LNA  SGN    
Sbjct: 579 FNFPQGMMMNPAFASQPLNYAAMA---SLLAQQQQYLGNMSNFQQFGNLNAQGSGNVLSM 635

Query: 649 -------SVLPDIF--NSSNQPQHVAVMSNSKKDETKAFDFVSDHLAAARGSKK 693
                  S LPDIF  N  NQ    + M+ SKK++T+AFDF+SDHL +AR +K+
Sbjct: 636 GTSGGNQSALPDIFQPNFGNQAP-TSTMNGSKKEDTRAFDFISDHLTSARDTKR 688



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,486,133
Number of extensions: 544178
Number of successful extensions: 1263
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1256
Number of HSP's successfully gapped: 2
Length of query: 693
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 588
Effective length of database: 8,227,889
Effective search space: 4837998732
Effective search space used: 4837998732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)