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Os01g0232000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major intrinsic protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.048) R2 : 0.494
β1 : -0.77 (0.176) R2dD : 0.0222 R2D : 0.0277
β2 : 1.86 (0.123) R2dC : 0.257 R2C : 0.195
β3 : 1.86 (0.137) R2dE : 0.21 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.6 (0.551) R2dD*E : 0.0479 R2D*E : 0.0519
γ1 : 0.175 (0.102) R2dN8 : 0.00433 R2N8 : 0.0064
σ : 0.897
deviance : 370.56
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C
peak time of C : 4.17
E
wheather : radiation
threshold : 3.19
memory length : 84
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
370.56 0.904 11.2 -0.77 1.86 1.86 -0.0104 -3.61 0.175 4.17 3.18 84 13.1 --
399.14 0.93 11.2 -0.897 1.82 1.71 -0.0814 -- 0.164 3.68 0.009982 59 13.2 --
370.56 0.897 11.2 -0.77 1.86 1.86 -- -3.6 0.175 4.17 3.19 84 13.1 --
398.15 0.929 11.2 -0.755 1.85 1.84 -- -- 0.172 4.23 0.000617 53 12.6 --
434.21 0.971 11.2 -0.88 -- 2.04 -- -1.38 0.217 -- 2.23 349 10.1 --
445.62 0.99 11.2 -0.989 2.02 -- -1.44 -- 0.122 1.3 -- -- -- --
453.74 0.998 11.2 -0.941 2.03 -- -- -- 0.128 1.47 -- -- -- --
442.9 0.98 11.2 -0.865 -- 2.05 -- -- 0.2 -- 2.303 354 9.87 --
412.48 0.946 11.2 -- 1.63 1.88 -- -- 0.227 4.38 0.009988 52 11.9 --
706.59 1.24 11.2 -0.86 -- -- -- -- 0.171 -- -- -- -- --
477.06 1.02 11.2 -- 2.01 -- -- -- 0.233 1.45 -- -- -- --
461.9 1 11.2 -- -- 2.03 -- -- 0.315 -- 1.352 346 10.1 --
726.1 1.26 11.2 -- -- -- -- -- 0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 365.42 radiation 1.0 30 < th dose dependent rect. 6 18
5 366.47 radiation 1.0 30 < th dose independent rect. 6 18
7 366.54 radiation 1.0 10 < th dose dependent rect. 11 13
17 367.59 radiation 1.0 30 < th dose dependent rect. 13 11
23 369.15 radiation 1.0 30 < th dose independent rect. 11 13
28 370.12 radiation 1.0 30 < th dose independent rect. 13 11
30 370.62 radiation 1.0 30 < th dose dependent rect. 15 9
52 372.39 radiation 1.0 90 < th dose independent sin 19 NA
54 372.58 radiation 20.0 90 < th dose dependent rect. 11 13
58 372.72 radiation 1.0 90 < th dose dependent sin 19 NA
66 373.18 radiation 1.0 30 < th dose independent rect. 15 9
144 377.77 radiation 1.0 90 > th dose independent sin 20 NA
169 378.69 temperature 25.0 90 < th dose independent rect. 13 11
171 378.96 wind 1.0 270 > th dose independent rect. 3 10
183 379.51 temperature 25.0 90 < th dose independent rect. 15 9
188 379.73 temperature 30.0 10 < th dose dependent rect. 17 7
197 380.52 temperature 10.0 270 > th dose dependent rect. 3 9
201 380.68 atmosphere 1000.0 90 > th dose independent rect. 24 17
213 380.98 temperature 25.0 10 < th dose independent rect. 16 8
247 382.23 temperature 30.0 10 < th dose dependent rect. 13 11
316 384.42 humidity 70.0 30 > th dose independent rect. 12 12
318 384.52 humidity 60.0 30 > th dose independent rect. 17 7
365 385.85 temperature 10.0 270 > th dose dependent rect. 12 14
375 386.14 temperature 15.0 10 > th dose dependent rect. 14 16
397 386.60 humidity 70.0 30 > th dose independent rect. 6 18
404 386.73 humidity 60.0 90 > th dose independent rect. 18 20
446 387.57 temperature 20.0 10 > th dose dependent rect. 14 13
480 388.66 humidity 70.0 30 > th dose independent rect. 10 14
494 388.83 humidity 50.0 10 > th dose dependent rect. 6 18
500 388.98 atmosphere 995.0 90 > th dose independent rect. 17 7
501 388.98 temperature 15.0 90 > th dose dependent rect. 14 4
513 389.16 humidity 50.0 10 > th dose independent rect. 19 19
515 389.17 precipitation 0.1 90 < th dose independent rect. 17 7
516 389.17 precipitation 0.1 90 < th dose dependent rect. 17 7
518 389.19 temperature 15.0 270 > th dose dependent rect. 13 2
537 389.50 temperature 10.0 90 > th dose independent rect. 17 7
538 389.50 radiation 20.0 90 < th dose independent rect. 17 7
541 389.50 temperature 10.0 90 > th dose independent rect. 24 17
542 389.50 atmosphere 1015.0 90 < th dose independent rect. 24 17
549 389.58 humidity 80.0 90 < th dose dependent rect. 6 12
554 389.63 humidity 90.0 90 < th dose dependent rect. 11 7
569 389.83 precipitation 0.1 90 < th dose independent rect. 24 17
570 389.83 humidity 90.0 270 < th dose dependent rect. 11 5
572 389.83 precipitation 0.1 90 < th dose dependent rect. 24 17
585 390.03 humidity 50.0 270 > th dose independent rect. 16 21
592 390.12 temperature 10.0 1440 > th dose independent rect. 18 7
595 390.12 humidity 50.0 1440 > th dose independent rect. 18 7
597 390.12 radiation 20.0 1440 < th dose independent rect. 18 7
609 390.12 temperature 10.0 1440 > th dose independent rect. 1 17
612 390.12 humidity 80.0 90 < th dose dependent rect. 11 23
626 390.36 humidity 50.0 270 > th dose independent rect. 3 10
627 390.36 wind 1.0 270 > th dose independent rect. 18 17
628 390.37 wind 9.0 90 < th dose independent rect. 17 7
639 390.56 radiation 1.0 270 > th dose independent rect. 11 7
670 390.99 temperature 20.0 270 > th dose independent rect. 4 8
679 391.14 wind 1.0 90 > th dose independent rect. 17 7
690 391.31 radiation 1.0 270 > th dose independent rect. 9 21
695 391.37 wind 9.0 90 < th dose independent rect. 24 17
696 391.38 humidity 90.0 270 < th dose dependent rect. 13 2
722 391.69 wind 7.0 270 < th dose independent rect. 13 14
730 391.80 temperature 10.0 10 > th dose dependent rect. 14 5
748 392.03 humidity 90.0 90 < th dose dependent rect. 13 5
754 392.06 radiation 30.0 270 < th dose dependent rect. 16 17
789 392.43 radiation 1.0 90 > th dose independent rect. 14 4
801 392.45 humidity 80.0 270 < th dose independent rect. 13 2
817 392.59 temperature 25.0 90 > th dose independent rect. 14 4
822 392.64 atmosphere 1000.0 270 > th dose independent rect. 11 7
865 393.06 wind 7.0 270 < th dose independent rect. 14 1
902 393.29 radiation 1.0 270 > th dose independent rect. 14 1
910 393.37 radiation 40.0 10 < th dose dependent rect. 19 16
913 393.42 precipitation 0.1 270 < th dose independent rect. 13 3
916 393.42 precipitation 0.1 270 < th dose dependent rect. 13 3
919 393.45 temperature 20.0 10 > th dose dependent rect. 14 9
928 393.50 radiation 1.0 270 > th dose dependent rect. 13 3
937 393.60 radiation 20.0 10 < th dose independent rect. 6 18
943 393.66 wind 7.0 270 < th dose independent rect. 13 3
946 393.67 precipitation 0.1 90 < th dose independent rect. 18 20
947 393.67 precipitation 0.1 90 < th dose dependent rect. 18 20
952 393.70 radiation 30.0 270 < th dose independent rect. 17 16
954 393.72 humidity 50.0 270 > th dose independent rect. 5 8
957 393.73 radiation 1.0 270 > th dose independent rect. 9 9
958 393.74 wind 1.0 270 > th dose independent rect. 14 1
962 393.76 radiation 1.0 10 < th dose dependent rect. 11 9