Os01g0218500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0218500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SP3D.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.65	(0.0563)	R²	:	0.909
β₁	:	14.2	(0.285)	R²_dD	:	1.72	R²_D	:	0.556
β₂	:	1.16	(0.11)	R²_dC	:	0.0223	R²_C	:	-0.0528
β₃	:	-0.197	(0.166)	R²_dE	:	0.000374	R²_E	:	-0.101
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	15.4	(0.826)	R²_dD*E	:	0.259	R²_D*E	:	-0.777
γ₁	:	1.58	(0.117)	R²_dN8	:	0.0804	R²_N8	:	-0.149
σ	:	0.796
deviance	:	292.07
__

_____

C
peak time of C	:	4.46
E
wheather	:	temperature
threshold	:	17.42
memory length	:	5407
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
288.51	0.798	5.65	14.2	1.15	-0.213	1.16	15.4	1.58	4.45	17.57	5394	--	--
495.16	1.04	6.3	10.1	0.878	-1.33	1.38	--	0.486	4.98	-1.26	9399	--	--
292.07	0.796	5.65	14.2	1.16	-0.197	--	15.4	1.58	4.46	17.42	5407	--	--
337.98	0.856	6.55	7.16	1.18	2.68	--	--	-0.643	4.53	32.29	47520	--	--
362.72	0.887	5.65	14.3	--	-0.0793	--	15.8	1.61	--	17.7	5449	--	--
512.51	1.06	6.34	9.82	1.18	--	1.69	--	0.303	4.28	--	--	--	--
520.35	1.07	6.34	9.8	1.19	--	--	--	0.293	4.37	--	--	--	--
411.56	0.945	6.57	7.19	--	2.71	--	--	-0.635	--	32.2	47520	--	--
954.71	1.44	6.76	--	1.26	6.24	--	--	-1.56	4.62	33.65	47520	--	--
597.01	1.14	6.35	9.85	--	--	--	--	0.325	--	--	--	--	--
3054.07	2.59	6.59	--	1.38	--	--	--	-0.798	4.22	--	--	--	--
1007.98	1.48	7.16	--	--	6.88	--	--	-3.27	--	19.9	47520	--	--
3157.3	2.62	6.6	--	--	--	--	--	-0.768	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	202.61	radiation	1.0	43200	< th	dose independent	rect.	6	1
2	202.69	radiation	1.0	43200	> th	dose independent	rect.	6	1
3	205.90	wind	5.0	43200	< th	dose independent	rect.	1	1
4	207.77	wind	5.0	43200	> th	dose independent	rect.	1	1
5	209.03	temperature	15.0	43200	> th	dose dependent	rect.	10	2
48	210.97	temperature	30.0	43200	< th	dose dependent	rect.	9	1
124	212.12	temperature	15.0	43200	> th	dose dependent	sin	4	NA
190	212.88	temperature	20.0	43200	> th	dose independent	rect.	3	2
202	213.00	temperature	20.0	43200	< th	dose independent	rect.	3	2
298	213.90	temperature	15.0	43200	> th	dose dependent	rect.	23	1
304	213.94	temperature	15.0	43200	> th	dose dependent	rect.	7	21
341	214.13	temperature	15.0	43200	> th	dose dependent	no	NA	NA
346	214.16	temperature	20.0	43200	> th	dose independent	rect.	2	5
350	214.18	precipitation	0.1	43200	> th	dose independent	rect.	6	9
360	214.19	temperature	15.0	43200	> th	dose dependent	rect.	2	23
444	214.50	precipitation	0.1	43200	< th	dose independent	rect.	6	9
445	214.50	precipitation	0.1	43200	< th	dose dependent	rect.	6	9
531	214.88	temperature	15.0	43200	> th	dose dependent	rect.	2	1
539	214.92	humidity	70.0	43200	> th	dose independent	rect.	18	21
565	215.05	humidity	90.0	43200	> th	dose dependent	rect.	12	4
611	215.28	temperature	25.0	43200	< th	dose independent	rect.	8	6
681	215.63	temperature	25.0	43200	> th	dose independent	rect.	8	5
730	215.86	temperature	30.0	43200	< th	dose dependent	sin	4	NA
812	216.21	temperature	25.0	43200	> th	dose independent	rect.	9	3