BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0218500 Os01g0218500|AK072979
(276 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176 258 3e-69
AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176 246 7e-66
AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176 181 5e-46
AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178 178 3e-45
AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178 176 1e-44
AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174 150 7e-37
>AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176
Length = 175
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 114/154 (74%), Positives = 134/154 (87%)
Query: 123 FVRRVALRVAYGAREVANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSDPN 182
F R + L+V YG REV NG +LRPS V ++PRV +GG D+R FYTLVMVDPD PSPS+P+
Sbjct: 22 FNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPH 81
Query: 183 LREYLHWLVTDIPATTGVSFGTEVVCYESPRPVLGIHRLVFLLFEQLGRQTVYAPGWRQN 242
LREYLHWLVTDIPATTG +FG E+VCYE+P P GIHR+VF+LF QLGRQTVYAPGWRQN
Sbjct: 82 LREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQN 141
Query: 243 FSTRDFAELYNLGLPVAAVYFNCQRESGTGGRRM 276
F+TR+FAE+YNLGLPVAAV++NCQRESG GGRR+
Sbjct: 142 FNTREFAEIYNLGLPVAAVFYNCQRESGCGGRRL 175
>AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176
Length = 175
Score = 246 bits (629), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 114/153 (74%), Positives = 129/153 (84%)
Query: 123 FVRRVALRVAYGAREVANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSDPN 182
F R V+L+V YG REV NG +LRPS V ++P V +GG D R FYTLVMVDPD PSPS+P+
Sbjct: 22 FTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDDFRNFYTLVMVDPDVPSPSNPH 81
Query: 183 LREYLHWLVTDIPATTGVSFGTEVVCYESPRPVLGIHRLVFLLFEQLGRQTVYAPGWRQN 242
REYLHWLVTDIPATTG +FG EVVCYESPRP GIHR+V +LF QLGRQTVYAPGWRQ
Sbjct: 82 QREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVLFRQLGRQTVYAPGWRQQ 141
Query: 243 FSTRDFAELYNLGLPVAAVYFNCQRESGTGGRR 275
F+TR+FAE+YNLGLPVAA YFNCQRE+G GGRR
Sbjct: 142 FNTREFAEIYNLGLPVAASYFNCQRENGCGGRR 174
>AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176
Length = 175
Score = 181 bits (458), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 111/151 (73%), Gaps = 4/151 (2%)
Query: 127 VALRVAYGA-REVANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSDPNLRE 185
V + V Y + ++V NG EL PS V +P+V V G DMR+F+TLVM DPD P PSDP LRE
Sbjct: 26 VKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLRE 85
Query: 186 YLHWLVTDIPATTGVSFGTEVVCYESPRPVLGIHRLVFLLFEQLGRQTVYA-PGWRQNFS 244
+LHW+VTDIP TT VSFG E++ YE PRP +GIHR V+LLF+Q R +V + P +R F+
Sbjct: 86 HLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFN 145
Query: 245 TRDFAELYNLGLPVAAVYFNCQRESGTGGRR 275
TR+FA +LGLPVAAV+FNCQRE T RR
Sbjct: 146 TREFAHENDLGLPVAAVFFNCQRE--TAARR 174
>AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178
Length = 177
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 111/154 (72%), Gaps = 3/154 (1%)
Query: 123 FVRRVALRVAYGAREVANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSDPN 182
F + V+Y ++V+NG EL PS+V+ +PRV + G D+R+F+TLVM+DPD P PSDP
Sbjct: 25 FTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPF 84
Query: 183 LREYLHWLVTDIPATTGVSFGTEVVCYESPRPVLGIHRLVFLLFEQLGRQTVY--APGWR 240
L+E+LHW+VT+IP TT +FG EVV YE PRP +GIHR VF+LF Q R+ ++ P R
Sbjct: 85 LKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPS-R 143
Query: 241 QNFSTRDFAELYNLGLPVAAVYFNCQRESGTGGR 274
+F+TR FA Y+LGLPVAAV+FN QRE+ R
Sbjct: 144 DHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177
>AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178
Length = 177
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 108/146 (73%), Gaps = 2/146 (1%)
Query: 127 VALRVAYGARE-VANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSDPNLRE 185
V +RV + + V+NG EL PS + +PRV +GG D+R+F+TL+M+DPDAPSPS+P +RE
Sbjct: 25 VTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFFTLIMMDPDAPSPSNPYMRE 84
Query: 186 YLHWLVTDIPATTGVSFGTEVVCYESPRPVLGIHRLVFLLFEQLGRQTVY-APGWRQNFS 244
YLHW+VTDIP TT SFG E+V YE+P+PV GIHR VF LF+Q GRQ V AP R+ F+
Sbjct: 85 YLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFN 144
Query: 245 TRDFAELYNLGLPVAAVYFNCQRESG 270
T F+ + L PVAAVYFN QRE+
Sbjct: 145 TNAFSSYFGLSQPVAAVYFNAQRETA 170
>AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174
Length = 173
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 96/151 (63%), Gaps = 3/151 (1%)
Query: 123 FVRRVALRVAYGAREVANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSDPN 182
F+ + V +G + + NGCE++PS + P+V + G YTLVM DPDAPSPS+PN
Sbjct: 21 FIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISG-HSDELYTLVMTDPDAPSPSEPN 79
Query: 183 LREYLHWLVTDIPATTGVSFGTEVVCYESPRPVLGIHRLVFLLFEQLGR--QTVYAPGWR 240
+RE++HW+V DIP T S G E++ Y PRP +GIHR + +LF Q V P R
Sbjct: 80 MREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFRQNSPVGLMVQQPPSR 139
Query: 241 QNFSTRDFAELYNLGLPVAAVYFNCQRESGT 271
NFSTR FA ++LGLPVA VYFN Q+E +
Sbjct: 140 ANFSTRMFAGHFDLGLPVATVYFNAQKEPAS 170
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,460,525
Number of extensions: 212704
Number of successful extensions: 385
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 6
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)