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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0217900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.037) R2 : 0.298
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.57 (0.18) R2dE : 0.118 R2E : 0.0184
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.922 (0.0783) R2dN8 : 0.279 R2N8 : 0.18
σ : 0.694
deviance : 222.15
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 67.34
memory length : 7011
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.56 0.695 5.8 0.0524 0.324 1.54 -0.61 0.753 -0.871 5.98 67 6225 -- --
219.35 0.69 5.8 0.0414 0.334 1.57 -0.682 -- -0.87 5.89 67.21 6221 -- --
219.37 0.69 5.8 0.0343 0.319 1.52 -- 0.814 -0.87 6.3 67 6222 -- --
220.4 0.691 5.8 0.0391 0.328 1.55 -- -- -0.865 6.36 67.48 6222 -- --
222.54 0.695 5.81 0.13 -- 1.61 -- 0.594 -0.863 -- 66.69 6988 -- --
255.85 0.75 5.8 -0.0992 0.214 -- -0.456 -- -0.861 6.13 -- -- -- --
256.32 0.75 5.8 -0.103 0.213 -- -- -- -0.859 6.57 -- -- -- --
221.89 0.694 5.81 0.0986 -- 1.6 -- -- -0.91 -- 67 7026 -- --
220.44 0.691 5.8 -- 0.327 1.55 -- -- -0.868 6.36 67.47 6222 -- --
258.67 0.752 5.8 -0.0978 -- -- -- -- -0.855 -- -- -- -- --
256.6 0.749 5.8 -- 0.211 -- -- -- -0.847 6.6 -- -- -- --
222.15 0.694 5.82 -- -- 1.57 -- -- -0.922 -- 67.34 7011 -- --
258.93 0.751 5.8 -- -- -- -- -- -0.844 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.18 wind 7.0 43200 > th dose dependent rect. 12 1
2 214.24 precipitation 0.1 14400 > th dose independent rect. 4 1
3 214.42 precipitation 0.1 14400 > th dose dependent rect. 4 1
4 214.48 humidity 70.0 14400 < th dose dependent rect. 11 2
5 214.49 wind 9.0 43200 < th dose independent rect. 11 2
6 214.57 precipitation 0.1 14400 < th dose independent rect. 4 1
7 214.57 precipitation 0.1 14400 < th dose dependent rect. 4 1
8 214.69 humidity 70.0 14400 < th dose dependent rect. 16 22
14 214.98 humidity 70.0 14400 < th dose dependent rect. 20 18
22 215.10 humidity 70.0 14400 < th dose dependent rect. 6 8
33 215.13 humidity 70.0 14400 < th dose dependent rect. 11 23
34 215.14 humidity 70.0 14400 < th dose dependent sin 3 NA
50 215.22 humidity 60.0 14400 < th dose independent rect. 11 23
55 215.29 humidity 70.0 14400 < th dose dependent rect. 19 23
63 215.36 humidity 70.0 14400 < th dose dependent no NA NA
64 215.36 humidity 70.0 14400 < th dose dependent rect. 6 16
130 215.43 humidity 70.0 14400 < th dose dependent rect. 7 11
164 215.45 humidity 60.0 14400 < th dose independent rect. 19 21
223 215.56 humidity 60.0 14400 < th dose independent rect. 6 10
235 215.57 wind 9.0 43200 > th dose independent rect. 11 2
256 215.67 humidity 60.0 14400 < th dose independent sin 1 NA
278 215.73 humidity 60.0 14400 < th dose independent no NA NA
279 215.73 humidity 60.0 14400 < th dose independent rect. 6 15
394 215.81 humidity 70.0 14400 < th dose dependent rect. 11 11
462 215.95 humidity 60.0 14400 > th dose independent rect. 11 23
464 215.96 humidity 70.0 14400 < th dose independent rect. 17 16
466 215.99 humidity 60.0 14400 < th dose independent rect. 11 11
489 216.14 humidity 60.0 14400 > th dose independent rect. 19 22
494 216.16 humidity 60.0 14400 < th dose independent rect. 11 6
500 216.20 humidity 60.0 14400 < th dose independent rect. 11 2
523 216.28 humidity 60.0 14400 > th dose independent rect. 24 17
528 216.29 humidity 60.0 14400 > th dose independent rect. 6 11
540 216.31 humidity 60.0 14400 > th dose independent rect. 15 23
550 216.36 humidity 60.0 14400 > th dose independent rect. 5 20
554 216.37 humidity 60.0 14400 > th dose independent no NA NA
556 216.37 humidity 60.0 14400 > th dose independent rect. 7 18
574 216.37 humidity 60.0 14400 > th dose independent rect. 23 22
587 216.38 humidity 60.0 14400 > th dose independent rect. 7 15
588 216.38 humidity 60.0 14400 > th dose independent rect. 5 16
642 216.42 wind 3.0 43200 < th dose dependent rect. 5 1
643 216.43 humidity 60.0 14400 > th dose independent sin 2 NA
667 216.46 humidity 70.0 14400 < th dose dependent sin 10 NA
772 216.90 humidity 60.0 14400 > th dose independent rect. 11 14
774 216.90 humidity 60.0 14400 > th dose independent rect. 11 17
784 216.92 humidity 60.0 14400 > th dose independent rect. 11 11
826 217.09 humidity 60.0 14400 > th dose independent rect. 11 7
849 217.16 humidity 70.0 14400 < th dose independent sin 10 NA
922 217.50 humidity 70.0 14400 > th dose independent rect. 17 16