BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0217900 Os01g0217900|J065160E23
         (70 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36490.1  | chr2:15308259-15314272 REVERSE LENGTH=1394         102   5e-23
AT5G04560.2  | chr5:1309786-1318091 FORWARD LENGTH=1988           101   9e-23
AT4G34060.1  | chr4:16314004-16319254 FORWARD LENGTH=1045          62   7e-11
AT3G10010.1  | chr3:3081999-3088195 REVERSE LENGTH=1333            60   3e-10

>AT2G36490.1 | chr2:15308259-15314272 REVERSE LENGTH=1394
          Length = 1393

 Score =  102 bits (253), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 1    VYFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGFDRTSRAPRPLYARLHFPASKI 54
            VYFGTS+PTIFKGL+TE+IQ CFW+G+VCVRGFDR +R P+PL ARLHFPASK+
Sbjct: 1332 VYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGPKPLIARLHFPASKL 1385



>AT5G04560.2 | chr5:1309786-1318091 FORWARD LENGTH=1988
          Length = 1987

 Score =  101 bits (251), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 52/58 (89%)

Query: 1    VYFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGFDRTSRAPRPLYARLHFPASKITRNK 58
            VYFGTS+ +IF+GL+TE+IQ CFW+GFVCVRGF++ +RAPRPL ARLHFPASK+  NK
Sbjct: 1929 VYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKLKNNK 1986



>AT4G34060.1 | chr4:16314004-16319254 FORWARD LENGTH=1045
          Length = 1044

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query: 1    VYFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGFDRTSRAPRPLYARLHFP 50
            +Y G+++ +IFK L T  I+ CFW GF+C+R FDR  R P+ L  RLH P
Sbjct: 981  LYCGSTVTSIFKLLDTRRIELCFWTGFLCLRAFDRKQRDPKELVRRLHTP 1030



>AT3G10010.1 | chr3:3081999-3088195 REVERSE LENGTH=1333
          Length = 1332

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 2    YFGTSIPTIFKGLTTEEIQHCFWRGFVCVRGFDRTSRAPRPLYARLHFPASKITRNKKS 60
            Y G+S+ +I KGL+ E I++ F  G+VCVRGFDR +R P+ L  RLH     I   +K+
Sbjct: 1272 YLGSSVSSICKGLSVEAIKYNFQEGYVCVRGFDRENRKPKSLVKRLHCSHVAIRTKEKT 1330



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,602,010
Number of extensions: 52433
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 4
Length of query: 70
Length of database: 11,106,569
Length adjustment: 42
Effective length of query: 28
Effective length of database: 9,955,097
Effective search space: 278742716
Effective search space used: 278742716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)