Os01g0210600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os01g0210600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.61 | 0.303 | 13.7 | -0.344 | 0.34 | 0.294 | 0.014 | -1.15 | 0.0231 | 3.44 | 20.29 | 1659 | -- | -- |
| 42.46 | 0.303 | 13.7 | -0.232 | 0.288 | 0.618 | -0.0335 | -- | 0.015 | 3.58 | 18.4 | 3049 | -- | -- |
| 41.61 | 0.3 | 13.7 | -0.344 | 0.34 | 0.294 | -- | -1.15 | 0.0231 | 3.44 | 20.29 | 1659 | -- | -- |
| 42.11 | 0.302 | 13.7 | -0.297 | 0.331 | 0.699 | -- | -- | 0.0318 | 3.42 | 18.4 | 3099 | -- | -- |
| 48.04 | 0.323 | 13.7 | -0.345 | -- | 0.303 | -- | -1.19 | 0.0256 | -- | 20.4 | 1488 | -- | -- |
| 48.15 | 0.325 | 13.7 | 0.0409 | 0.342 | -- | 0.00533 | -- | 0.162 | 3.52 | -- | -- | -- | -- |
| 48.15 | 0.325 | 13.7 | 0.0408 | 0.342 | -- | -- | -- | 0.162 | 3.52 | -- | -- | -- | -- |
| 47.86 | 0.322 | 13.7 | -0.268 | -- | 0.723 | -- | -- | 0.0438 | -- | 18.32 | 2676 | -- | -- |
| 43.5 | 0.307 | 13.7 | -- | 0.335 | 0.521 | -- | -- | 0.0824 | 3.43 | 18.3 | 3053 | -- | -- |
| 54.7 | 0.346 | 13.7 | 0.0552 | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
| 48.2 | 0.325 | 13.7 | -- | 0.343 | -- | -- | -- | 0.158 | 3.52 | -- | -- | -- | -- |
| 49.13 | 0.326 | 13.7 | -- | -- | 0.565 | -- | -- | 0.0964 | -- | 18.29 | 2679 | -- | -- |
| 54.78 | 0.345 | 13.7 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 2 | 36.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 36.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 36.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 7 | 37.11 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 20 | 37.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 21 | 37.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 22 | 37.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 85 | 38.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 87 | 38.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 88 | 38.94 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 1 |
| 90 | 38.94 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 164 | 39.71 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 174 | 39.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 235 | 40.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 236 | 40.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 244 | 40.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 245 | 40.36 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 249 | 40.38 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 256 | 40.43 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 259 | 40.45 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 273 | 40.52 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 274 | 40.52 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 304 | 40.61 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 307 | 40.62 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 314 | 40.65 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 336 | 40.71 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 339 | 40.72 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 344 | 40.73 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 348 | 40.74 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 352 | 40.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 381 | 40.82 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 389 | 40.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 402 | 40.86 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 436 | 40.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 437 | 40.95 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 480 | 41.05 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 485 | 41.05 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 543 | 41.05 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 675 | 41.17 | humidity | 60 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 691 | 41.20 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 13 |
| 733 | 41.25 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 785 | 41.30 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 819 | 41.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 824 | 41.37 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 841 | 41.39 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 895 | 41.43 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 7 | NA |
| 909 | 41.44 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 17 |
| 962 | 41.48 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |