BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0210600 Os01g0210600|AK060099
(167 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 162 6e-41
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 151 1e-37
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 151 2e-37
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 134 2e-32
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 131 1e-31
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 100 6e-22
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 162 bits (411), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MGSQAIEA-HREGAEVYHGAALCAEKAVELLAEIHMPLGLLPLAEMEEVGYNRATGFVWL 59
M SQ ++ REGAE+ +G + C +KA E+L+ +++P GLLPL M E+G+N++TG+VW+
Sbjct: 1 MSSQETKSDQREGAEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVWI 60
Query: 60 RQKKAITHTFKQISRQVSFAAEVTAFVEDRRMKRVTGAKTKELLIWVSLSDMFIDKDDAS 119
+ K + H FK I R VS+ +EVTA +E+RRM ++TG K+KE+LIWV++S++F++ D +
Sbjct: 61 KIKNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDPT 120
Query: 120 KITFKTPTGLGRTYPVDAFAKED 142
+ITF PTGL RT+PV AF +++
Sbjct: 121 QITFANPTGLSRTFPVTAFEEDE 143
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 101/145 (69%), Gaps = 7/145 (4%)
Query: 7 EAHREGAEVYHGAALCAEKAVELLAEIHMPLGLLPLAEMEEVGYNRATGFVWLRQKKAIT 66
E R AE+Y G +C EK L EI MP GLLPL ++EEVGY+R +G VWL+QKK+IT
Sbjct: 6 EEVRAKAEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKKSIT 65
Query: 67 HTFKQISRQVSFAAEVTAFVEDRRMKRVTGAKTKELLIWVSLSDMFIDKDDASKITFKTP 126
H F +I + VS+ EVTA VE ++K++TG K KELLIWV++++++ + + +KITFKTP
Sbjct: 66 HKFTEIDKLVSYGTEVTAIVETGKIKKLTGVKAKELLIWVTINEIYTE-EPPTKITFKTP 124
Query: 127 TGLGRTYPVDAF------AKEDDGK 145
T L RT+PV AF AKE+ K
Sbjct: 125 TTLSRTFPVTAFIVPEEPAKEEPAK 149
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 96/131 (73%), Gaps = 1/131 (0%)
Query: 10 REGAEVYHGAALCAEKAVELLAEIHMPLGLLPLAEMEEVGYNRATGFVWLRQKKAITHTF 69
R AE Y G +C EK E L E+ MP GLLPL ++EEVGY+R TG VWL+QKK+ITH F
Sbjct: 9 RARAEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKKSITHKF 68
Query: 70 KQISRQVSFAAEVTAFVEDRRMKRVTGAKTKELLIWVSLSDMFIDKDDAS-KITFKTPTG 128
+ I + VS+A EV A VE ++K++TG K KELLIWV+L+++ +++ +S KI F+TPTG
Sbjct: 69 EAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKINFRTPTG 128
Query: 129 LGRTYPVDAFA 139
L RT+PV AF
Sbjct: 129 LSRTFPVSAFV 139
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 84/116 (72%), Gaps = 4/116 (3%)
Query: 11 EGAEVYHGAALCAEKAVELLAEIHMPLGLLPLAEMEEVGYNRATGFVWLRQKKAITHTFK 70
+ E Y +LC +KA ELLA I +P GLLPL +M EVGYN+ GFVW+R + I HTF+
Sbjct: 12 DDIESYSDQSLCLDKAKELLALIKLPTGLLPLKDMTEVGYNKTKGFVWMRMRSKIEHTFR 71
Query: 71 QISRQVSFAAEVTAFVEDRRMKRVTGAKTKELLIWVSLSDMFIDKDDASKITFKTP 126
+I R+V + E+TAFVEDRRM+R+TG K+KEL+IWV ++D+FI + KI ++P
Sbjct: 72 EIGRRVLYDTEITAFVEDRRMRRLTGVKSKELMIWVPVNDIFIKR----KILRRSP 123
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 94/142 (66%)
Query: 2 GSQAIEAHREGAEVYHGAALCAEKAVELLAEIHMPLGLLPLAEMEEVGYNRATGFVWLRQ 61
G + REGAE+ +GA C ++++ELL E+ P G++PL + E G RATG+VW++Q
Sbjct: 5 GVVVVGGEREGAEIVYGAEECYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYVWMKQ 64
Query: 62 KKAITHTFKQISRQVSFAAEVTAFVEDRRMKRVTGAKTKELLIWVSLSDMFIDKDDASKI 121
H F+ + +VS+ EVTA+V+ MK++TG K+K++ +WV + +M +++ + KI
Sbjct: 65 DTPYEHFFEATNTRVSYGLEVTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEPKSKKI 124
Query: 122 TFKTPTGLGRTYPVDAFAKEDD 143
FKTP G+GR++PV F E++
Sbjct: 125 YFKTPMGIGRSFPVTGFMDEEE 146
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 10/141 (7%)
Query: 7 EAHREGAEVYHGAALCAEKAVELLAEIHMPLGLLPLAEMEEVGYNRATGFVWLR------ 60
EA + AEVYHG C EK LL+EI +P LL E++E GY + TGFVWL+
Sbjct: 4 EAMKAKAEVYHGDKTCREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKEKKK 63
Query: 61 --QKKAITHTFKQISRQVSFAAEVTAFVEDRRMKRVTGAKTKELLIWVSLSDMFIDKDDA 118
QK+ + + V F EVTA+ E R+K++TG K KE ++W+SL ++ +++ +
Sbjct: 64 EDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWISLGEIQVNR-SS 122
Query: 119 SKITFKTPTG-LGRTYPVDAF 138
ITFKT G L ++ P+ F
Sbjct: 123 GLITFKTEVGLLSKSLPLSVF 143
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,279,446
Number of extensions: 120025
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 6
Length of query: 167
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 76
Effective length of database: 8,611,713
Effective search space: 654490188
Effective search space used: 654490188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)