Os01g0205100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0205100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.66 | 0.269 | 8.02 | -0.762 | 0.0876 | 0.56 | 0.218 | -0.828 | -0.208 | 21.2 | 19.65 | 1132 | -- | -- |
| 33.85 | 0.271 | 8.01 | -0.656 | 0.0876 | 0.728 | 0.162 | -- | -0.174 | 20.7 | 19.4 | 1133 | -- | -- |
| 32.82 | 0.267 | 8.02 | -0.761 | 0.0912 | 0.562 | -- | -0.793 | -0.206 | 20.7 | 19.6 | 1142 | -- | -- |
| 33.88 | 0.271 | 8 | -0.666 | 0.0842 | 0.745 | -- | -- | -0.185 | 20.5 | 19.4 | 1139 | -- | -- |
| 33.24 | 0.269 | 8.02 | -0.756 | -- | 0.609 | -- | -0.731 | -0.204 | -- | 19.4 | 1093 | -- | -- |
| 43.59 | 0.31 | 7.97 | -0.38 | 0.128 | -- | 0.0671 | -- | -0.0537 | 22.1 | -- | -- | -- | -- |
| 43.61 | 0.309 | 7.97 | -0.383 | 0.127 | -- | -- | -- | -0.054 | 22.2 | -- | -- | -- | -- |
| 34.24 | 0.273 | 8 | -0.665 | -- | 0.747 | -- | -- | -0.186 | -- | 19.42 | 1092 | -- | -- |
| 43.41 | 0.307 | 7.98 | -- | 0.0904 | 0.385 | -- | -- | -0.0737 | 20.3 | 20.19 | 1046 | -- | -- |
| 44.59 | 0.312 | 7.97 | -0.381 | -- | -- | -- | -- | -0.0537 | -- | -- | -- | -- | -- |
| 47.47 | 0.322 | 7.96 | -- | 0.125 | -- | -- | -- | -0.0114 | 22 | -- | -- | -- | -- |
| 43.52 | 0.307 | 7.98 | -- | -- | 0.433 | -- | -- | -0.0735 | -- | 19.6 | 870 | -- | -- |
| 48.41 | 0.325 | 7.96 | -- | -- | -- | -- | -- | -0.0115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 30.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 4 | 31.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 6 | 31.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 9 | 31.32 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 10 | 31.34 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 14 | 31.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 16 |
| 21 | 31.38 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 27 | 31.39 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 28 | 31.39 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 32 | 31.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 33 | 31.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 44 | 31.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 104 | 31.59 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 106 | 31.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 130 | 31.66 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 167 | 31.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 216 | 31.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 243 | 31.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 244 | 31.95 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 268 | 32.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 276 | 32.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 282 | 32.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 289 | 32.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 290 | 32.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 291 | 32.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 302 | 32.25 | radiation | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 309 | 32.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 336 | 32.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 12 |
| 346 | 32.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 350 | 32.35 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 366 | 32.37 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 380 | 32.38 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 382 | 32.39 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 447 | 32.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 611 | 32.73 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 650 | 32.79 | radiation | 1 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 670 | 32.83 | radiation | 1 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 723 | 32.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 735 | 32.90 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 16 |
| 747 | 32.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 784 | 32.96 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 846 | 33.02 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 870 | 33.04 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 892 | 33.06 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 904 | 33.07 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 908 | 33.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 909 | 33.08 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 956 | 33.13 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 981 | 33.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |