BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0205100 Os01g0205100|AK121987
(381 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45760.1 | chr5:18561121-18563005 FORWARD LENGTH=361 377 e-105
AT3G49660.1 | chr3:18413690-18415223 FORWARD LENGTH=318 50 3e-06
>AT5G45760.1 | chr5:18561121-18563005 FORWARD LENGTH=361
Length = 360
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/380 (52%), Positives = 254/380 (66%), Gaps = 31/380 (8%)
Query: 10 AAEGRKPRRLRGHKKGAVTCCVASSSRPGVVASSGEDGCLCWFDLRTKDVLFTMEATNQP 69
A +PR+LRGHK A TCC+AS RPG+V +SGEDGC+CWFDLR KDV F ++ +P
Sbjct: 2 ATAMEEPRKLRGHKSTA-TCCIASRDRPGIVLTSGEDGCICWFDLRCKDVQFIIDVGTEP 60
Query: 70 ISSVCFKAGNEDLVYASAGNEILSFDVRM--GPQAKPLDTYNYNRDEINQIAVSSKG-FL 126
+SS+CFK GNE+++YAS GNEI SFDV KPL++YNYN+DE+NQ+ + + FL
Sbjct: 61 VSSLCFKTGNENILYASCGNEIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFL 120
Query: 127 AAADDSGDVKIINTIQKSLYKRLREAHTSICSSVQFIPWRPWTAITGGLDSKLAVWDFSK 186
A+ADDSGDVKII+ QK LYK LR HTSICSSVQFIPWRPW ITGGLDSKL +WDFSK
Sbjct: 121 ASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKLVLWDFSK 180
Query: 187 GRTLFSIDYGSPEMQNGSSGGQCFNPPFVHSIAVSEEGILGGSYKXXXXXXXXXXXXXXX 246
GR+ ID+GS N GQC NP FVHSIA+ E ++
Sbjct: 181 GRSQKIIDFGSDTNNN---SGQCLNPAFVHSIAIPEMDMVD------------------K 219
Query: 247 LEYELAPAKSKGLPRMADLSLSSKRTDLGDGCGSQSQGN----RIHLDYTVGGHTSSVSC 302
L+ A A+ G+ + ++ R S S N R+ LDY+VGGH S+VSC
Sbjct: 220 LDKICAVARGDGIVNLINIESELSRKGTSSKGSSSSSSNNVVKRVCLDYSVGGHNSAVSC 279
Query: 303 VTFSAFGEKGKFLVSGGNDSSIKLWDWSKGF--SSETNNSAELVLDIKVNKKVNWLCTTP 360
V FS F EKG+FL+SGGND ++K+WD K ++ NNS L L+I ++KKVNWLCT
Sbjct: 280 VAFSLFQEKGRFLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQ 339
Query: 361 TDSDNLIVCDTSKVVKVYNL 380
+DS+NL+VCDT++VVKVY++
Sbjct: 340 SDSENLVVCDTTRVVKVYSI 359
>AT3G49660.1 | chr3:18413690-18415223 FORWARD LENGTH=318
Length = 317
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 62 TMEATNQPISSVCFKAGNEDLVYASAGNEILSFDVRM--GPQAKPLDTYNYNRDEINQIA 119
T+ + N+ +SSV F + L ASA I ++ + P A+P+ + + + I+ +A
Sbjct: 19 TLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVA 78
Query: 120 VSSKG-FLAAADDSGDVKIINTIQKSLYKRLREAHTSICSSVQFIPWRPWTAITGGLDSK 178
SS F+ +A D +K+ + SL K L HT+ V F P + ++G D
Sbjct: 79 FSSDARFIVSASDDKTLKLWDVETGSLIKTLI-GHTNYAFCVNFNP-QSNMIVSGSFDET 136
Query: 179 LAVWDFSKGRTL 190
+ +WD + G+ L
Sbjct: 137 VRIWDVTTGKCL 148
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,511,821
Number of extensions: 357297
Number of successful extensions: 1386
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 281
Effective length of database: 8,364,969
Effective search space: 2350556289
Effective search space used: 2350556289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)