Os01g0204000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0204000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.55 | 0.334 | 7.97 | 2.59 | 0.116 | -0.701 | 1.1 | 1.05 | 0.582 | 14.5 | 63 | 600 | -- | -- |
| 50.69 | 0.332 | 7.97 | 2.59 | 0.0319 | -0.674 | 1.04 | -- | 0.547 | 13.5 | 64.4 | 470 | -- | -- |
| 54.82 | 0.345 | 7.97 | 2.62 | 0.136 | -0.733 | -- | 1 | 0.595 | 15.1 | 63 | 600 | -- | -- |
| 54.84 | 0.345 | 7.96 | 2.64 | 0.0521 | -0.69 | -- | -- | 0.557 | 16.3 | 64.99 | 470 | -- | -- |
| 54.81 | 0.345 | 7.97 | 2.62 | -- | -0.754 | -- | 0.407 | 0.571 | -- | 64.09 | 470 | -- | -- |
| 59.42 | 0.361 | 7.99 | 2.68 | 0.254 | -- | 1.33 | -- | 0.49 | 16 | -- | -- | -- | -- |
| 63.39 | 0.373 | 7.99 | 2.7 | 0.309 | -- | -- | -- | 0.498 | 17.8 | -- | -- | -- | -- |
| 54.94 | 0.345 | 7.96 | 2.63 | -- | -0.714 | -- | -- | 0.564 | -- | 64.49 | 469 | -- | -- |
| 232.37 | 0.71 | 8.02 | -- | 0.00403 | -1.06 | -- | -- | 0.298 | 15.3 | 52.03 | 500 | -- | -- |
| 68.35 | 0.386 | 7.98 | 2.69 | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
| 254.86 | 0.747 | 8.05 | -- | 0.269 | -- | -- | -- | 0.198 | 18.2 | -- | -- | -- | -- |
| 232.28 | 0.71 | 8.03 | -- | -- | -1.08 | -- | -- | 0.291 | -- | 52 | 525 | -- | -- |
| 258.61 | 0.751 | 8.05 | -- | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.32 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 3 | 49.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 15 | 49.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 91 | 50.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 92 | 50.53 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 96 | 50.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 136 | 50.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 179 | 50.91 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 217 | 51.05 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 10 |
| 243 | 51.15 | humidity | 60 | 720 | > th | dose independent | rect. | 21 | 22 |
| 258 | 51.17 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 264 | 51.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 277 | 51.21 | humidity | 70 | 720 | < th | dose dependent | rect. | 9 | 8 |
| 281 | 51.22 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 7 |
| 282 | 51.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 283 | 51.23 | humidity | 80 | 270 | < th | dose dependent | sin | 15 | NA |
| 316 | 51.28 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 333 | 51.30 | humidity | 50 | 720 | > th | dose independent | rect. | 1 | 17 |
| 345 | 51.32 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 21 |
| 363 | 51.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 372 | 51.35 | temperature | 20 | 270 | > th | dose dependent | sin | 22 | NA |
| 373 | 51.35 | humidity | 90 | 10 | < th | dose dependent | sin | 12 | NA |
| 374 | 51.35 | humidity | 70 | 720 | < th | dose dependent | sin | 23 | NA |
| 400 | 51.38 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 23 |
| 408 | 51.39 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 423 | 51.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 466 | 51.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 4 |
| 514 | 51.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 515 | 51.47 | humidity | 70 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 516 | 51.48 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 19 |
| 517 | 51.48 | temperature | 25 | 270 | > th | dose dependent | sin | 20 | NA |
| 539 | 51.49 | humidity | 70 | 720 | < th | dose dependent | no | NA | NA |
| 655 | 51.54 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 674 | 51.56 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 684 | 51.57 | humidity | 60 | 270 | > th | dose independent | sin | 12 | NA |
| 709 | 51.59 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 18 |
| 713 | 51.59 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 734 | 51.61 | temperature | 25 | 10 | > th | dose dependent | sin | 12 | NA |
| 778 | 51.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 886 | 51.72 | humidity | 70 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 942 | 51.77 | humidity | 70 | 10 | > th | dose independent | sin | 11 | NA |
| 982 | 51.80 | humidity | 50 | 270 | > th | dose independent | sin | 0 | NA |
| 984 | 51.80 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 997 | 51.81 | temperature | 30 | 270 | > th | dose independent | sin | 17 | NA |