BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0204000 Os01g0204000|AK101188
(512 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78650.1 | chr1:29582987-29585508 FORWARD LENGTH=510 259 3e-69
>AT1G78650.1 | chr1:29582987-29585508 FORWARD LENGTH=510
Length = 509
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 187/513 (36%), Positives = 266/513 (51%), Gaps = 27/513 (5%)
Query: 14 IPQIHALFADPLRVISYKWLSRNFSVSSNDSKRLLQEFVNKHGADLKVIYSVSGWLKKNP 73
+ +I + +D L+V+SYKWLSRNFS+SSN +KRLL++FV KHG L+V+Y VSG LK P
Sbjct: 10 LDEIESFVSDQLQVVSYKWLSRNFSLSSNTAKRLLKDFVEKHGKGLEVVYIVSGLLKNGP 69
Query: 74 TNYCVKLTSGHKLEEARQEFKDSCSVQVYSIQACIPKDTAVLWNPEFVQAEELFNRPFDE 133
++Y +L S +L E +EF SV +YS+QA IP D A +WN EFVQAEELF +P
Sbjct: 70 SDYHARLASSTELPEVEKEFNGKYSVHIYSVQASIPMDPAAIWNTEFVQAEELFRQPSAT 129
Query: 134 ENCLRDNRFCGVLNSFVKRTANGKLVSSFPPKPINSVAAAAPLKTSSAPKEQSAKGQQQG 193
+NCL+ NRFCGV NS VKR G + P+ SV K+SS ++ + Q
Sbjct: 130 DNCLKGNRFCGVSNSCVKRNIEGATENVTAPR-TESVRTTGQSKSSSNFQKSTVPSNQGK 188
Query: 194 LPGSSSPKKGTSNKAEKDISSVLDKATNAPVVKEPSIALQGNKNKAQNGKALPSNGGSLA 253
SS G K+E + +++ + + KE + + NK Q K++ GG L
Sbjct: 189 NFQHSSSNVGHQAKSESIAAPAKNQSAKSSLDKEKAFHVPANKKNGQGEKSVTGTGGLLK 248
Query: 254 TMWGRASXXXXXXXXXXXXVLPSVAVTADAQICAKEEANADSSDDE-QAVHYKRGSSANN 312
MWGR V + ++ Q + + SDDE + ++ R + +N
Sbjct: 249 NMWGRV-PVKTEDDSPTVDVKNHITNHSEPQKPSHDADKKGGSDDETRDANFMR-APKDN 306
Query: 313 RKRRAVFXXXXXXXXXNVVAIASPEPPEQCITNPIDEVAQESNPKQENLENKQEVEKDVK 372
RKR+ +F +V+++ASP P+ ++ +++S P++ + + E+
Sbjct: 307 RKRKVIF-DFSDDEYEDVISLASPSSPKVNSRPDVELSSEDSGPEKPDADVSPEI----- 360
Query: 373 CCIGRTESPEC-KTKSSNTVS-HSGITL---KEKNNGPPPNDNKQDHAAETASNSPKRRK 427
++E PE K NT S + TL K + G N +SPKR+K
Sbjct: 361 ----KSEEPEASKEDRQNTASVDASTTLSTEKIQAIGSEAEVNPSKRRTTAVPSSPKRKK 416
Query: 428 VLKTRIDERGREVTEVVW-EGEASAGDKAEKNVS---DTG----AANRATLSSKPQPVAK 479
VLK+RID+RGREVTEVVW E E +A K + N S D G A NRA K +
Sbjct: 417 VLKSRIDDRGREVTEVVWEETETNAKKKEDTNTSKKLDDGKTANAVNRAVAQKKSPAIGN 476
Query: 480 TEKSNASSKTAGNKKPAKAGTKQGNIMSFFKKV 512
T +NA K K KQGNIMSFFKKV
Sbjct: 477 TAATNAGGKAGSKKGGNVKDPKQGNIMSFFKKV 509
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.123 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,196,270
Number of extensions: 479747
Number of successful extensions: 1727
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 409
Effective length of database: 8,282,721
Effective search space: 3387632889
Effective search space used: 3387632889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 114 (48.5 bits)