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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0201400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rapid ALkalinization Factor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0302) R2 : 0.141
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.08 (0.126) R2dE : 0.145 R2E : 0.139
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0595 (0.0646) R2dN8 : 0.00214 R2N8 : -0.00437
σ : 0.565
deviance : 147.42
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1001
memory length : 5984
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.49 0.549 3.35 0.254 0.18 0.797 -0.475 2.94 0.0585 5.81 1000 5895 -- --
144.2 0.559 3.37 0.185 0.184 1.06 -0.518 -- 0.0739 5.59 1001 5984 -- --
136.84 0.545 3.35 0.254 0.186 0.781 -- 2.92 0.0609 6.98 1001 5948 -- --
144.6 0.56 3.37 0.185 0.19 1.05 -- -- 0.0761 6.87 1001 5988 -- --
138.67 0.548 3.35 0.258 -- 0.785 -- 2.94 0.0643 -- 1001 5948 -- --
166.68 0.605 3.39 0.308 0.19 -- -0.387 -- -0.0196 6.1 -- -- -- --
166.91 0.605 3.39 0.306 0.193 -- -- -- -0.0175 7.05 -- -- -- --
146.53 0.564 3.37 0.185 -- 1.05 -- -- 0.0771 -- 1001 5992 -- --
145.45 0.562 3.37 -- 0.195 1.09 -- -- 0.0595 6.73 1001 5981 -- --
168.88 0.607 3.4 0.31 -- -- -- -- -0.014 -- -- -- -- --
169.37 0.609 3.4 -- 0.197 -- -- -- -0.0516 6.95 -- -- -- --
147.42 0.565 3.38 -- -- 1.08 -- -- 0.0595 -- 1001 5984 -- --
171.41 0.611 3.4 -- -- -- -- -- -0.0484 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.32 radiation 1.0 14400 < th dose dependent rect. 3 1
2 130.02 wind 5.0 4320 > th dose dependent rect. 20 3
7 131.44 humidity 90.0 1440 < th dose independent rect. 2 1
8 131.45 wind 5.0 4320 > th dose independent rect. 20 2
10 131.60 humidity 90.0 1440 < th dose dependent rect. 3 1
12 131.83 wind 7.0 4320 < th dose independent rect. 19 7
16 132.26 wind 7.0 4320 < th dose independent rect. 19 3
22 132.65 wind 7.0 4320 > th dose independent rect. 19 7
55 133.25 humidity 90.0 1440 < th dose independent rect. 1 5
79 133.66 humidity 90.0 1440 < th dose dependent rect. 23 5
98 133.83 humidity 90.0 1440 < th dose dependent rect. 23 8
109 134.02 humidity 70.0 1440 > th dose dependent rect. 2 2
139 134.33 atmosphere 1005.0 90 > th dose dependent rect. 2 1
178 135.15 humidity 90.0 1440 < th dose dependent rect. 24 1
205 135.73 atmosphere 1005.0 10 > th dose dependent rect. 2 2
208 135.85 humidity 50.0 1440 > th dose dependent rect. 24 7
213 135.88 radiation 1.0 14400 < th dose dependent rect. 19 8
215 135.94 atmosphere 1000.0 30 > th dose independent rect. 3 23
227 136.09 atmosphere 995.0 14400 < th dose independent rect. 17 1
228 136.09 atmosphere 995.0 14400 < th dose dependent rect. 17 1
229 136.09 temperature 25.0 90 > th dose dependent rect. 1 3
241 136.13 temperature 25.0 90 > th dose independent rect. 2 1
259 136.19 atmosphere 995.0 14400 > th dose independent rect. 16 1
262 136.21 temperature 25.0 90 > th dose dependent rect. 2 1
267 136.22 atmosphere 995.0 14400 > th dose independent rect. 16 5
273 136.25 wind 9.0 1440 < th dose independent rect. 3 1
274 136.25 temperature 10.0 1440 > th dose independent rect. 3 1
277 136.25 temperature 30.0 1440 < th dose independent rect. 3 1
281 136.25 humidity 50.0 1440 > th dose independent rect. 3 1
290 136.25 atmosphere 995.0 1440 > th dose independent rect. 3 1
291 136.25 radiation 1.0 1440 < th dose independent rect. 3 1
311 136.25 temperature 10.0 1440 > th dose independent rect. 4 23
320 136.26 atmosphere 995.0 14400 > th dose independent rect. 16 3
335 136.45 atmosphere 995.0 14400 > th dose independent rect. 18 1
342 136.50 wind 3.0 30 < th dose independent rect. 2 1
343 136.50 humidity 90.0 30 > th dose independent rect. 2 1
344 136.50 humidity 70.0 30 > th dose dependent rect. 2 1
349 136.51 wind 7.0 30 < th dose dependent rect. 2 1
360 136.55 atmosphere 1000.0 30 > th dose independent rect. 2 1
368 136.57 temperature 10.0 30 > th dose independent rect. 2 1
370 136.57 temperature 30.0 30 < th dose independent rect. 2 1
371 136.57 humidity 50.0 30 > th dose independent rect. 2 1
375 136.57 atmosphere 1010.0 30 < th dose independent rect. 2 1
377 136.57 radiation 1.0 30 < th dose independent rect. 2 1
382 136.57 precipitation 0.1 30 < th dose independent rect. 2 1
383 136.57 temperature 10.0 30 > th dose independent rect. 3 23
384 136.57 radiation 1.0 30 < th dose dependent rect. 2 1
389 136.57 precipitation 0.1 30 < th dose dependent rect. 2 1
413 136.70 atmosphere 1015.0 30 < th dose dependent rect. 2 1
442 136.90 precipitation 0.1 30 < th dose independent rect. 3 23
444 136.90 precipitation 0.1 30 < th dose dependent rect. 3 23
446 136.92 temperature 30.0 30 < th dose dependent rect. 2 1
450 136.97 atmosphere 995.0 14400 > th dose independent rect. 13 8
452 136.97 radiation 1.0 14400 < th dose dependent rect. 22 5
456 137.00 wind 1.0 30 > th dose independent rect. 2 1
518 137.15 atmosphere 995.0 14400 > th dose independent rect. 8 13
520 137.17 temperature 20.0 720 < th dose independent rect. 17 3
523 137.17 atmosphere 995.0 14400 > th dose independent rect. 8 11
532 137.22 temperature 20.0 720 < th dose independent rect. 19 1
563 137.37 temperature 20.0 720 < th dose independent rect. 9 11
617 137.54 atmosphere 995.0 14400 > th dose independent rect. 19 21
640 137.61 atmosphere 995.0 14400 < th dose independent rect. 22 18
648 137.63 atmosphere 995.0 14400 < th dose independent sin 4 NA
650 137.64 atmosphere 995.0 14400 > th dose independent sin 4 NA
697 137.70 atmosphere 995.0 14400 < th dose dependent rect. 3 14
705 137.73 atmosphere 995.0 14400 > th dose independent rect. 4 11
709 137.73 atmosphere 995.0 14400 < th dose dependent sin 1 NA
730 137.77 atmosphere 995.0 14400 < th dose dependent rect. 3 20
731 137.77 atmosphere 995.0 14400 < th dose dependent rect. 5 20
737 137.78 atmosphere 995.0 14400 < th dose dependent rect. 14 11
763 137.81 atmosphere 995.0 14400 < th dose dependent sin 18 NA
808 137.90 humidity 80.0 30 < th dose independent rect. 20 11
832 137.93 humidity 90.0 270 < th dose dependent rect. 24 5
854 137.97 atmosphere 995.0 14400 > th dose independent rect. 11 23
856 137.98 atmosphere 995.0 14400 > th dose independent no NA NA
859 137.98 atmosphere 995.0 14400 > th dose independent rect. 11 19
864 137.98 atmosphere 995.0 14400 > th dose independent rect. 4 23
865 137.98 atmosphere 995.0 14400 > th dose independent rect. 7 23
866 137.98 atmosphere 995.0 14400 > th dose independent rect. 9 23
867 137.98 atmosphere 995.0 14400 > th dose independent rect. 14 23
904 138.00 atmosphere 995.0 14400 > th dose independent rect. 24 23
932 138.02 atmosphere 995.0 14400 > th dose independent rect. 14 18
950 138.03 atmosphere 995.0 14400 > th dose independent rect. 14 16
960 138.04 atmosphere 995.0 14400 < th dose independent no NA NA
965 138.04 atmosphere 995.0 14400 < th dose independent rect. 14 16