BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0201400 Os01g0201400|AK070397
(146 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111 70 6e-13
AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139 63 7e-11
AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117 63 7e-11
AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111 62 1e-10
AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120 59 7e-10
AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121 58 1e-09
AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130 58 2e-09
AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114 56 6e-09
AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119 55 2e-08
>AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111
Length = 110
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 4/61 (6%)
Query: 86 RRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCARNT 145
RR LAARR Y+SY AL N VPC++RG+SYY +C +K ANPYRRGCS IT C R T
Sbjct: 54 RRQLAARRS---YISYGALRKNNVPCSRRGRSYY-DCKKRKRANPYRRGCSVITHCYRQT 109
Query: 146 N 146
+
Sbjct: 110 S 110
>AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139
Length = 138
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
Query: 84 LMRRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCAR 143
+ RR LA RR Y+SY AL N +PC++RG SYY NC ANPY RGCSAITRC R
Sbjct: 83 INRRILATRR----YISYGALRRNTIPCSRRGASYY-NCRRGAQANPYSRGCSAITRCRR 137
Query: 144 N 144
+
Sbjct: 138 S 138
>AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117
Length = 116
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 86 RRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCAR 143
RR LA T +Y+SY AL N VPC++RG SYY NC ANPY RGCSAITRC R
Sbjct: 64 RRILA----TTKYISYGALRRNTVPCSRRGASYY-NCRRGAQANPYSRGCSAITRCRR 116
>AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111
Length = 110
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 9/67 (13%)
Query: 82 ETLM-----RRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCS 136
E+LM RR LA R RY+ Y AL N VPC++RG+SYY +C ++ NPYRRGCS
Sbjct: 45 ESLMDSETNRRQLARGR---RYIGYDALKKNNVPCSRRGRSYY-DCKKRRRNNPYRRGCS 100
Query: 137 AITRCAR 143
AIT C R
Sbjct: 101 AITHCYR 107
>AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120
Length = 119
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 84 LMRRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCAR 143
+ RR LA ++ Y+SY A+ N VPC++RG SYY NC ANPY RGCS ITRC R
Sbjct: 65 ISRRILAQKK----YISYGAMRRNSVPCSRRGASYY-NCQRGAQANPYSRGCSTITRCRR 119
>AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121
Length = 120
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 86 RRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRC 141
RR LA T +Y+SY +L N VPC++RG SYY NC + ANPY RGCS I RC
Sbjct: 68 RRILA----TTKYISYQSLKRNSVPCSRRGASYY-NCQNGAQANPYSRGCSKIARC 118
>AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130
Length = 129
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 86 RRSLAARRPTNRYVSYAALDANKVPCNKR-GQSYY-QNCASQKA-ANPYRRGCSAITRCA 142
RRSL RR T Y+SY AL AN+VPC R G+SYY NC + +PY RGCS+ITRC
Sbjct: 70 RRSLYWRR-TKYYISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCR 128
Query: 143 R 143
R
Sbjct: 129 R 129
>AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114
Length = 113
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 86 RRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCARNT 145
RR L A++ RY+ Y L + VPC K G SYY +C S +A N Y RGC ITRCAR+T
Sbjct: 54 RRVLMAQK---RYIGYETLRRDMVPCQKPGASYY-DCRSGQA-NSYSRGCDTITRCARDT 108
Query: 146 N 146
N
Sbjct: 109 N 109
>AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119
Length = 118
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 86 RRSLAARRPTNRYVSYAALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCARNT 145
RR + R+ +Y+SY L + VPC K G SYY C S +A N Y RGCS ITRCAR+T
Sbjct: 59 RRVMMMRK---QYISYETLRRDMVPCQKPGASYYA-CRSGQA-NAYNRGCSVITRCARDT 113
Query: 146 N 146
N
Sbjct: 114 N 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.127 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,475,059
Number of extensions: 37474
Number of successful extensions: 92
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 9
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)