Os01g0200000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to autophagocytosis protein AUT1-like [Oryza sativa (japonica cultivar-group)].
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Os01g0200000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to autophagocytosis protein AUT1-like [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.16 | 0.195 | 11.3 | -0.273 | 0.119 | -0.106 | 0.133 | -0.513 | 0.013 | 9.24 | 1004 | 399 | -- | -- |
| 18.06 | 0.198 | 11.3 | -0.272 | 0.125 | -0.112 | 0.16 | -- | 0.001 | 9.31 | 1004 | 382 | -- | -- |
| 17.22 | 0.193 | 11.3 | -0.27 | 0.118 | -0.106 | -- | -0.521 | 0.0129 | 9.25 | 1004 | 398 | -- | -- |
| 18.15 | 0.198 | 11.3 | -0.273 | 0.121 | -0.118 | -- | -- | 0.000126 | 9.46 | 1004 | 382 | -- | -- |
| 18.03 | 0.198 | 11.3 | -0.266 | -- | -0.112 | -- | -0.524 | 0.0119 | -- | 1004 | 398 | -- | -- |
| 18.88 | 0.204 | 11.3 | -0.278 | 0.13 | -- | 0.182 | -- | 0.0327 | 9.35 | -- | -- | -- | -- |
| 19 | 0.204 | 11.3 | -0.271 | 0.13 | -- | -- | -- | 0.0329 | 9.35 | -- | -- | -- | -- |
| 19.02 | 0.203 | 11.3 | -0.274 | -- | -0.121 | -- | -- | -0.00011 | -- | 1004 | 382 | -- | -- |
| 19.38 | 0.205 | 11.3 | -- | 0.133 | -0.211 | -- | -- | 0.0424 | 9.75 | 1001 | 176 | -- | -- |
| 19.98 | 0.209 | 11.3 | -0.272 | -- | -- | -- | -- | 0.0334 | -- | -- | -- | -- | -- |
| 20.94 | 0.214 | 11.3 | -- | 0.13 | -- | -- | -- | 0.0631 | 9.51 | -- | -- | -- | -- |
| 20.32 | 0.21 | 11.3 | -- | -- | -0.238 | -- | -- | 0.0408 | -- | 1001 | 176 | -- | -- |
| 21.93 | 0.219 | 11.3 | -- | -- | -- | -- | -- | 0.0635 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 2 | 16.29 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 8 | 16.39 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 14 |
| 9 | 16.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 10 | 16.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 18 | 16.43 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 35 | 16.60 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 72 | 16.72 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 6 |
| 89 | 16.76 | temperature | 30 | 90 | > th | dose independent | sin | 6 | NA |
| 90 | 16.76 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 92 | 16.76 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 2 |
| 123 | 16.78 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 5 |
| 146 | 16.79 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 211 | 16.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 213 | 16.87 | temperature | 30 | 10 | > th | dose dependent | sin | 6 | NA |
| 219 | 16.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 261 | 16.96 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 263 | 16.96 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 3 | 16 |
| 285 | 17.01 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 354 | 17.04 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 8 | 3 |
| 361 | 17.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 369 | 17.06 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 13 |
| 380 | 17.07 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 384 | 17.08 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 395 | 17.09 | atmosphere | 1000 | 10 | < th | dose independent | sin | 0 | NA |
| 396 | 17.09 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 14 |
| 417 | 17.11 | atmosphere | 1005 | 720 | < th | dose dependent | sin | 4 | NA |
| 425 | 17.11 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 461 | 17.13 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 483 | 17.15 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 486 | 17.15 | atmosphere | 1005 | 270 | < th | dose dependent | sin | 1 | NA |
| 544 | 17.18 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 549 | 17.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 578 | 17.19 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 605 | 17.20 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 0 | NA |
| 612 | 17.20 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 633 | 17.21 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 9 |
| 651 | 17.22 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 12 | 20 |
| 658 | 17.22 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 664 | 17.22 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 6 | 14 |
| 665 | 17.22 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 19 | 19 |
| 681 | 17.23 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 13 |
| 691 | 17.24 | radiation | 10 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 737 | 17.25 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 2 |
| 757 | 17.25 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 11 |
| 771 | 17.26 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 14 |
| 813 | 17.27 | atmosphere | 1000 | 30 | > th | dose independent | sin | 2 | NA |
| 815 | 17.27 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 824 | 17.27 | radiation | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 959 | 17.29 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 11 |