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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0196300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0535) R2 : 0.364
β1 : 2.58 (0.197) R2dD : 0.258 R2D : 0.0995
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.938 (0.158) R2dE : 0.0579 R2E : 0.0229
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.01 (0.119) R2dN8 : 0.149 R2N8 : 0.107
σ : 0.987
deviance : 449.34
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 56.66
memory length : 1845
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
426.2 0.97 4.04 2.45 0.461 0.801 0.734 2.9 1.01 21.9 63 1956 -- --
437.91 0.975 4.01 2.68 0.462 0.964 0.764 -- 0.987 22.3 56 1963 -- --
428.16 0.964 4.04 2.43 0.45 0.798 -- 2.78 1.01 21.8 62.99 1933 -- --
438.52 0.975 4 2.58 0.443 0.983 -- -- 0.973 22.4 56.99 1964 -- --
438.42 0.975 4.02 2.44 -- 0.765 -- 2.81 1.03 -- 62.76 1761 -- --
476.4 1.02 3.94 2.37 0.33 -- 0.436 -- 1.23 23.1 -- -- -- --
477.15 1.02 3.94 2.35 0.331 -- -- -- 1.23 22.7 -- -- -- --
449.34 0.987 3.98 2.58 -- 0.938 -- -- 1.01 -- 56.66 1845 -- --
578.2 1.12 3.99 -- 0.278 1.23 -- -- 0.931 22.5 64 10690 -- --
483.91 1.03 3.93 2.36 -- -- -- -- 1.23 -- -- -- -- --
622.83 1.17 4 -- 0.351 -- -- -- 0.968 23.2 -- -- -- --
548.86 1.09 3.98 -- -- 1.78 -- -- 0.851 -- 64.97 28781 -- --
630.52 1.17 3.99 -- -- -- -- -- 0.97 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 430.38 humidity 60 1440 > th dose independent rect. 13 2
2 430.51 humidity 60 1440 > th dose independent rect. 13 4
6 431.02 humidity 60 1440 < th dose independent rect. 13 2
14 431.78 humidity 60 1440 > th dose independent rect. 12 22
16 431.83 humidity 60 1440 > th dose independent sin 22 NA
21 431.98 humidity 60 1440 > th dose independent rect. 4 13
23 431.98 humidity 60 1440 > th dose independent rect. 24 17
25 431.98 humidity 60 1440 > th dose independent rect. 18 23
30 431.99 humidity 60 1440 > th dose independent rect. 20 21
32 432.00 humidity 60 1440 < th dose independent rect. 13 4
39 432.04 humidity 60 1440 < th dose independent rect. 11 6
51 432.11 humidity 60 1440 > th dose independent rect. 9 20
57 432.12 humidity 60 1440 > th dose independent rect. 9 13
66 432.13 humidity 60 1440 > th dose independent rect. 11 19
69 432.14 humidity 60 1440 > th dose independent rect. 9 15
74 432.15 humidity 60 1440 > th dose independent rect. 11 10
107 432.35 humidity 60 1440 > th dose independent rect. 4 18
112 432.35 humidity 60 1440 > th dose independent rect. 24 22
131 432.37 humidity 60 1440 > th dose independent no NA NA
223 432.66 humidity 60 1440 < th dose independent sin 22 NA
224 432.71 humidity 60 1440 > th dose independent rect. 16 23
229 432.81 humidity 60 1440 < th dose independent rect. 18 23
245 432.87 humidity 60 1440 < th dose independent rect. 11 23
316 433.14 humidity 60 1440 < th dose independent no NA NA
427 433.31 humidity 60 1440 < th dose independent rect. 16 23
567 437.10 humidity 70 1440 < th dose dependent rect. 13 5
570 437.19 humidity 70 1440 < th dose dependent rect. 11 7
571 437.20 humidity 50 1440 > th dose dependent rect. 13 1
609 437.47 humidity 70 1440 < th dose dependent sin 18 NA
648 437.67 humidity 90 1440 < th dose dependent rect. 13 1
707 438.26 humidity 70 1440 < th dose dependent rect. 15 23
750 438.42 humidity 70 1440 < th dose dependent no NA NA
859 439.16 humidity 50 1440 > th dose dependent rect. 11 3
935 439.73 humidity 90 1440 < th dose dependent rect. 11 3