BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0196300 Os01g0196300|AK102964
         (439 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56960.1  | chr5:23038703-23041174 REVERSE LENGTH=467           76   3e-14
AT4G16430.1  | chr4:9267599-9269002 FORWARD LENGTH=468             50   2e-06

>AT5G56960.1 | chr5:23038703-23041174 REVERSE LENGTH=467
          Length = 466

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 41/47 (87%)

Query: 248 PSGNQLQHMISERKRREKLNDSFLALKAVLPPGSKKDKTSILIRARE 294
           PS  QLQHMISERKRREKLN+SF AL+++LPPG+KKDK S+L  ARE
Sbjct: 283 PSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIARE 329



>AT4G16430.1 | chr4:9267599-9269002 FORWARD LENGTH=468
          Length = 467

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 247 PPSGNQ--LQHMISERKRREKLNDSFLALKAVLPPGSKKDKTSILIRAREYV 296
           P +G +  L H+ +ER+RREKLN  F AL+AV+P  SK DK S+L  A  Y+
Sbjct: 311 PANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLADAITYI 362



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,981,569
Number of extensions: 112314
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 337
Effective length of database: 8,310,137
Effective search space: 2800516169
Effective search space used: 2800516169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)