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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0192900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 1-aminocyclopropane-1-carboxylate synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.113) R2 : 0.418
β1 : -0.611 (0.448) R2dD : 0.00312 R2D : 0.00775
β2 : 4.59 (0.285) R2dC : 0.398 R2C : 0.157
β3 : -4.04 (0.349) R2dE : 0.247 R2E : -0.0522
β4 : -4.04 (1.09) R2dD*C : 0.0208 R2D*C : 0.0053
β5 : 4.94 (1.44) R2dD*E : 0.0221 R2D*E : 0.00791
γ1 : 0.988 (0.265) R2dN8 : 0.031 R2N8 : -0.0327
σ : 2.05
deviance : 1906.44
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_____
C
peak time of C : 1.18
E
wheather : radiation
threshold : 16.37
memory length : 1243
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 10.4
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1906.44 2.05 4.17 -0.611 4.59 -4.04 -4.04 4.94 0.988 1.18 16.37 1243 10.4 --
1966.39 2.07 4.2 -0.86 4.64 -3.99 -3.07 -- 1.04 1.13 16.01 1238 10.5 --
1966.45 2.07 4.17 -0.509 4.66 -4.17 -- 3.41 1.03 1.07 16.37 1246 11.2 --
1984.79 2.07 4.21 -0.917 4.68 -3.91 -- -- 0.868 1.09 15.61 1242 10.7 --
2594.29 2.37 4.15 -0.759 -- -4.22 -- 4.02 0.791 -- 17.31 1726 12.1 --
2484.53 2.34 4.49 -1.9 3.29 -- -3.47 -- -0.448 1.41 -- -- -- --
2533.24 2.36 4.48 -1.79 3.29 -- -- -- -0.427 1.35 -- -- -- --
2486.54 2.32 4.02 -0.673 -- -6 -- -- 0.816 -- 10.17 1687 15.9 --
2015.12 2.09 4.22 -- 4.7 -3.97 -- -- 0.881 1.05 15.59 1237 10.9 --
3198.22 2.64 4.44 -1.66 -- -- -- -- -0.359 -- -- -- -- --
2617.34 2.39 4.44 -- 3.25 -- -- -- -0.228 1.33 -- -- -- --
2162.07 2.17 4.14 -- -- -8.18 -- -- 0.742 -- 2.331 1595 18.7 --
3270.67 2.67 4.4 -- -- -- -- -- -0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1964.25 radiation 20 1440 < th dose dependent rect. 11 22
2 1966.30 humidity 60 720 > th dose dependent rect. 17 4
5 1968.99 humidity 60 720 > th dose dependent rect. 16 6
17 1976.61 radiation 10 1440 < th dose dependent sin 23 NA
18 1976.87 radiation 20 1440 < th dose dependent rect. 8 23
23 1978.44 radiation 20 1440 < th dose dependent rect. 6 18
25 1978.54 radiation 20 1440 < th dose dependent rect. 6 13
30 1978.82 radiation 20 1440 < th dose dependent rect. 6 22
33 1979.07 radiation 1 1440 > th dose dependent rect. 11 22
51 1980.55 radiation 20 1440 < th dose dependent rect. 2 22
54 1980.64 radiation 20 1440 < th dose dependent rect. 2 17
77 1981.05 radiation 20 1440 > th dose independent rect. 11 22
79 1981.07 radiation 20 1440 < th dose dependent rect. 22 21
101 1981.29 radiation 20 1440 < th dose dependent no NA NA
168 1985.00 radiation 20 1440 < th dose dependent rect. 16 23
331 1989.35 radiation 20 1440 < th dose independent rect. 11 22
339 1989.50 radiation 20 1440 < th dose dependent rect. 14 23
430 1993.49 radiation 10 1440 > th dose independent rect. 16 23
549 1995.06 radiation 1 1440 > th dose dependent rect. 11 7
577 1995.62 radiation 1 1440 > th dose dependent sin 20 NA
589 1996.03 radiation 40 1440 < th dose dependent rect. 11 7
592 1996.13 radiation 20 1440 < th dose independent rect. 11 6
599 1996.37 radiation 40 1440 < th dose dependent rect. 11 13
617 1996.91 radiation 40 1440 < th dose dependent rect. 11 17
645 1998.21 radiation 20 1440 < th dose independent rect. 11 19
649 1998.40 radiation 20 1440 < th dose independent rect. 11 13
696 1999.80 radiation 1 1440 > th dose dependent rect. 6 12
729 2000.34 radiation 20 1440 > th dose independent rect. 14 23
741 2000.63 radiation 1 1440 > th dose dependent rect. 8 23
803 2001.67 radiation 1 1440 > th dose dependent no NA NA
903 2003.84 radiation 20 1440 > th dose independent no NA NA
904 2003.84 radiation 20 1440 > th dose independent rect. 6 11