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Os01g0188100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0225) R2 : 0.913
β1 : -1.08 (0.0826) R2dD : 0.0337 R2D : 0.011
β2 : 3.67 (0.0556) R2dC : 0.819 R2C : 0.83
β3 : -1.02 (0.0635) R2dE : 0.0484 R2E : 0.0667
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.312 (0.0481) R2dN8 : 0.0115 R2N8 : -0.000643
σ : 0.421
deviance : 81.81
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_____
C
peak time of C : 2.68
E
wheather : humidity
threshold : 39.06
memory length : 31
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.95
open length of G : 20

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.48 0.427 11.8 -1.07 3.7 -0.96 0.0393 -0.0147 -0.315 2.71 46.18 30 5.97 20
82.02 0.422 11.8 -1.01 3.7 -0.981 -0.00939 -- -0.301 2.7 41.25 35 5.9 20
82.09 0.422 11.8 -1.12 3.68 -1.01 -- 0.174 -0.34 2.66 41.01 29 5.95 20
81.81 0.421 11.8 -1.08 3.67 -1.02 -- -- -0.312 2.68 39.06 31 5.95 20
212.09 0.678 11.9 -2.43 -- -3.61 -- -0.175 -1.06 -- 7.275 407 5.83 12.6
119.35 0.512 11.8 -0.998 3.73 -- 0.1 -- -0.334 3.05 -- -- -- --
119.38 0.512 11.8 -1 3.73 -- -- -- -0.335 3.05 -- -- -- --
100.62 0.467 11.8 -1.14 -- -4.51 -- -- -0.352 -- -58.62 579 3.75 13.8
111.98 0.493 11.8 -- 3.66 -0.94 -- -- -0.19 2.71 37.62 48 5.9 20.4
917.62 1.42 11.8 -0.841 -- -- -- -- -0.238 -- -- -- -- --
145.73 0.565 11.8 -- 3.72 -- -- -- -0.223 3.05 -- -- -- --
130.64 0.532 11.8 -- -- -4.29 -- -- -0.234 -- -121.5 571 3.68 13.8
936.26 1.43 11.8 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.34 humidity 50.0 30 > th dose dependent rect. 6 20
3 83.89 humidity 50.0 90 > th dose dependent rect. 6 9
4 83.91 temperature 20.0 90 > th dose dependent rect. 2 3
6 84.03 temperature 15.0 10 > th dose dependent rect. 2 4
15 85.11 temperature 15.0 270 > th dose dependent rect. 24 5
38 86.64 humidity 50.0 10 > th dose independent rect. 6 9
39 86.76 radiation 20.0 10 < th dose dependent rect. 2 4
45 87.11 radiation 10.0 10 < th dose independent rect. 2 4
46 87.13 wind 7.0 90 < th dose independent rect. 15 14
51 87.22 radiation 40.0 30 < th dose dependent rect. 14 16
71 87.76 wind 9.0 270 < th dose dependent rect. 1 2
73 87.82 temperature 20.0 90 > th dose independent rect. 2 3
77 87.90 wind 7.0 10 < th dose independent rect. 2 4
79 87.93 temperature 10.0 10 > th dose independent rect. 2 4
81 87.93 temperature 30.0 10 < th dose independent rect. 2 4
82 87.93 humidity 50.0 10 > th dose independent rect. 2 4
85 87.93 atmosphere 995.0 10 > th dose independent rect. 2 4
86 87.93 atmosphere 1010.0 10 < th dose independent rect. 2 4
91 87.93 temperature 10.0 10 > th dose independent rect. 6 20
94 88.03 humidity 50.0 10 > th dose independent rect. 6 20
101 88.24 atmosphere 995.0 10 > th dose independent rect. 6 20
105 88.33 precipitation 0.1 10 < th dose independent rect. 2 4
106 88.33 precipitation 0.1 10 < th dose dependent rect. 2 4
107 88.34 wind 3.0 90 < th dose independent rect. 2 3
112 88.39 humidity 50.0 90 > th dose independent rect. 5 10
113 88.40 atmosphere 995.0 90 > th dose independent rect. 5 10
134 88.51 temperature 10.0 90 > th dose independent rect. 5 10
135 88.51 atmosphere 1015.0 90 < th dose independent rect. 5 10
136 88.51 temperature 10.0 90 > th dose independent rect. 15 14
137 88.52 wind 7.0 10 < th dose independent rect. 15 15
138 88.53 precipitation 0.1 90 < th dose independent rect. 5 10
139 88.53 precipitation 0.1 90 < th dose dependent rect. 5 10
143 88.55 wind 9.0 10 < th dose dependent rect. 2 4
146 88.60 wind 7.0 270 < th dose independent rect. 1 2
150 88.65 temperature 10.0 270 > th dose independent rect. 1 2
152 88.65 temperature 30.0 270 < th dose independent rect. 1 2
153 88.65 humidity 50.0 270 > th dose independent rect. 1 2
156 88.65 atmosphere 995.0 270 > th dose independent rect. 1 2
157 88.65 atmosphere 1010.0 270 < th dose independent rect. 1 2
159 88.65 radiation 1.0 270 < th dose independent rect. 1 2
164 88.65 precipitation 0.1 270 < th dose independent rect. 1 2
166 88.65 temperature 10.0 270 > th dose independent rect. 3 22
167 88.65 radiation 1.0 270 < th dose dependent rect. 1 2
172 88.65 precipitation 0.1 270 < th dose dependent rect. 1 2
175 88.68 precipitation 0.1 10 < th dose independent rect. 6 20
176 88.68 precipitation 0.1 10 < th dose dependent rect. 6 20
182 88.78 wind 9.0 1440 < th dose independent rect. 3 4
183 88.78 temperature 10.0 1440 > th dose independent rect. 3 4
186 88.78 temperature 30.0 1440 < th dose independent rect. 3 4
190 88.78 humidity 50.0 1440 > th dose independent rect. 3 4
195 88.78 atmosphere 995.0 1440 > th dose independent rect. 3 4
196 88.78 radiation 40.0 1440 < th dose independent rect. 3 4
200 88.78 temperature 10.0 1440 > th dose independent rect. 7 20
204 88.79 radiation 40.0 90 < th dose independent rect. 15 14
206 88.82 precipitation 0.1 90 < th dose independent rect. 15 14
207 88.82 precipitation 0.1 90 < th dose dependent rect. 15 14
212 88.86 humidity 50.0 10 > th dose dependent rect. 2 4
243 89.30 wind 9.0 10 < th dose independent rect. 6 20
249 89.37 radiation 20.0 720 < th dose independent rect. 5 3
262 89.50 temperature 10.0 90 > th dose dependent rect. 15 14
268 89.56 atmosphere 995.0 90 > th dose dependent rect. 2 3
270 89.60 radiation 40.0 10 < th dose independent rect. 15 15
273 89.63 temperature 10.0 10 > th dose independent rect. 6 9
275 89.63 atmosphere 995.0 10 > th dose independent rect. 6 9
276 89.63 atmosphere 1015.0 10 < th dose independent rect. 6 9
277 89.63 temperature 10.0 10 > th dose independent rect. 15 15
299 89.64 temperature 10.0 10 > th dose dependent rect. 15 15
300 89.65 precipitation 0.1 10 < th dose independent rect. 6 9
301 89.65 precipitation 0.1 10 < th dose dependent rect. 6 9
314 89.79 humidity 50.0 270 > th dose dependent rect. 1 2
322 89.86 wind 9.0 10 < th dose dependent rect. 15 15
342 90.01 atmosphere 995.0 10 > th dose dependent rect. 2 4
367 90.11 wind 1.0 90 > th dose independent rect. 5 10
381 90.17 precipitation 0.1 10 < th dose independent rect. 15 15
385 90.17 precipitation 0.1 10 < th dose dependent rect. 15 15
394 90.30 wind 9.0 90 < th dose independent rect. 5 10
415 90.45 temperature 10.0 1440 > th dose independent rect. 7 9
418 90.45 temperature 10.0 1440 > th dose independent rect. 16 15
421 90.45 humidity 70.0 30 > th dose independent rect. 6 20
422 90.45 wind 9.0 270 < th dose independent rect. 3 22
444 90.59 atmosphere 1015.0 1440 < th dose independent rect. 3 4
466 90.67 radiation 1.0 90 > th dose independent sin 4 NA
557 91.23 atmosphere 1010.0 270 < th dose independent rect. 24 5
564 91.25 temperature 30.0 270 < th dose independent rect. 24 5
565 91.25 humidity 50.0 270 > th dose independent rect. 24 5
568 91.25 atmosphere 995.0 270 > th dose independent rect. 24 5
577 91.26 humidity 50.0 10 > th dose independent rect. 6 11
582 91.29 atmosphere 1010.0 10 < th dose independent rect. 15 15
583 91.30 wind 9.0 10 < th dose independent rect. 6 9
589 91.30 radiation 10.0 270 < th dose dependent rect. 5 19
604 91.41 precipitation 0.1 270 < th dose independent rect. 24 5
606 91.41 precipitation 0.1 270 < th dose dependent rect. 24 5
694 91.55 atmosphere 995.0 270 > th dose independent rect. 3 22
699 91.57 radiation 1.0 270 < th dose independent rect. 5 19
710 91.62 radiation 1.0 90 < th dose dependent sin 3 NA
734 91.74 radiation 1.0 90 < th dose dependent rect. 2 15
740 91.78 atmosphere 1015.0 10 < th dose independent rect. 6 20
748 91.86 atmosphere 995.0 90 > th dose independent rect. 15 14
786 92.09 wind 1.0 270 > th dose independent rect. 5 19
787 92.10 radiation 1.0 30 > th dose independent rect. 6 9
794 92.16 atmosphere 995.0 10 > th dose independent rect. 15 15
805 92.23 radiation 40.0 720 < th dose dependent rect. 5 3
932 92.94 radiation 40.0 30 < th dose independent rect. 6 20
942 93.02 radiation 1.0 90 > th dose independent rect. 4 11
958 93.05 radiation 20.0 720 < th dose independent rect. 21 11
964 93.07 precipitation 0.1 270 < th dose independent rect. 3 22
965 93.07 precipitation 0.1 270 < th dose dependent rect. 3 22
972 93.10 temperature 10.0 720 > th dose dependent rect. 17 2
996 93.14 radiation 40.0 30 < th dose dependent rect. 6 20