BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0188100 Os01g0188100|J100072I17
(65 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46500.1 | chr3:17120793-17122602 FORWARD LENGTH=252 91 8e-20
AT1G35190.1 | chr1:12890544-12892632 FORWARD LENGTH=330 90 2e-19
AT3G46480.1 | chr3:17103173-17105594 FORWARD LENGTH=287 80 1e-16
AT3G46490.1 | chr3:17115629-17119451 FORWARD LENGTH=331 77 1e-15
AT4G16770.1 | chr4:9434571-9437168 REVERSE LENGTH=326 59 3e-10
AT4G16765.1 | chr4:9429974-9431791 REVERSE LENGTH=248 57 2e-09
>AT3G46500.1 | chr3:17120793-17122602 FORWARD LENGTH=252
Length = 251
Score = 91.3 bits (225), Expect = 8e-20, Method: Composition-based stats.
Identities = 35/51 (68%), Positives = 45/51 (88%)
Query: 10 IAFFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHADLTAY 60
IAFF++PSHDC+VECLPTC+SE+NPPK+P I CS YL+QRY+D+ DL+ Y
Sbjct: 199 IAFFLQPSHDCIVECLPTCQSENNPPKYPAIKCSTYLTQRYQDSQVDLSIY 249
>AT1G35190.1 | chr1:12890544-12892632 FORWARD LENGTH=330
Length = 329
Score = 90.1 bits (222), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 45/51 (88%)
Query: 10 IAFFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHADLTAY 60
I FFVEP+HDC+VECLPTCKSES PK+PPI CS YL+QRY++THA+L+ Y
Sbjct: 275 IPFFVEPNHDCLVECLPTCKSESELPKYPPIKCSTYLTQRYEETHANLSIY 325
>AT3G46480.1 | chr3:17103173-17105594 FORWARD LENGTH=287
Length = 286
Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 43/51 (84%)
Query: 10 IAFFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHADLTAY 60
I FF+EPSHDC+VECLPTC+SE+N PK+P I CS +L+QRY+ +H +L+ Y
Sbjct: 233 IPFFIEPSHDCLVECLPTCQSENNLPKYPAIKCSTFLTQRYQQSHVNLSIY 283
>AT3G46490.1 | chr3:17115629-17119451 FORWARD LENGTH=331
Length = 330
Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 10 IAFFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHADL 57
I FF++PSHDC++ECLPTC+SE+N PK+P I CS Y+SQRYK HA L
Sbjct: 280 IPFFLKPSHDCIIECLPTCQSENNLPKYPAIKCSTYISQRYKAVHAHL 327
>AT4G16770.1 | chr4:9434571-9437168 REVERSE LENGTH=326
Length = 325
Score = 59.3 bits (142), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 10 IAFFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHADLTAYSSN 63
+A FV+P +CVVECL +C SE++PPKFPP+ Y +R+ T L +YS +
Sbjct: 274 VAVFVDPDPNCVVECLESCCSETSPPKFPPVRARDYFHERFSQT---LASYSGS 324
>AT4G16765.1 | chr4:9429974-9431791 REVERSE LENGTH=248
Length = 247
Score = 56.6 bits (135), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 10 IAFFVEPSHDCVVECLPTCKSESNPPKFPPITCSAYLSQRYKDTHA 55
+ FF++P+ DC V+CL +C SE+ PP+FPPI Y+ +R++ T+A
Sbjct: 200 VVFFLDPNPDCNVKCLESCCSETCPPRFPPILAGDYIKERFRLTYA 245
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,607,861
Number of extensions: 54584
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 6
Length of query: 65
Length of database: 11,106,569
Length adjustment: 38
Effective length of query: 27
Effective length of database: 10,064,761
Effective search space: 271748547
Effective search space used: 271748547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)