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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0182100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1618 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.63 (0.0294) R2 : 0.719
β1 : 3.06 (0.11) R2dD : 0.519 R2D : 0.24
β2 : 0.927 (0.073) R2dC : 0.101 R2C : 0.0339
β3 : -0.619 (0.0781) R2dE : 0.0428 R2E : -0.0443
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.18 (0.0633) R2dN8 : 0.291 R2N8 : 0.122
σ : 0.549
deviance : 138.99
__
_____
C
peak time of C : 14.7
E
wheather : temperature
threshold : 28.61
memory length : 1391
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.93 0.554 9.63 3.03 0.926 -0.607 0.13 -0.111 1.17 14.8 28.64 1383 -- --
138.93 0.549 9.63 3.06 0.927 -0.619 0.139 -- 1.18 14.8 28.6 1388 -- --
138.98 0.549 9.63 3.03 0.927 -0.605 -- -0.147 1.17 14.7 28.6 1388 -- --
138.99 0.549 9.63 3.06 0.927 -0.619 -- -- 1.18 14.7 28.61 1391 -- --
184.78 0.633 9.54 3.35 -- -0.867 -- 0.666 1.41 -- 25.4 1178 -- --
157.98 0.589 9.61 2.87 1 -- 0.267 -- 1.24 14.7 -- -- -- --
158.22 0.589 9.61 2.87 1 -- -- -- 1.25 14.7 -- -- -- --
182.91 0.63 9.59 3.13 -- -0.98 -- -- 1.33 -- 25.03 1165 -- --
364.97 0.89 9.72 -- 0.608 1.06 -- -- 0.818 14.1 14.3 146 -- --
216.68 0.688 9.62 2.83 -- -- -- -- 1.22 -- -- -- -- --
375.92 0.907 9.69 -- 0.945 -- -- -- 0.926 14.6 -- -- -- --
383.6 0.912 9.73 -- -- 1.7 -- -- 0.716 -- 12.21 76 -- --
428.14 0.966 9.69 -- -- -- -- -- 0.907 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.72 wind 5 43200 > th dose independent rect. 6 1
2 127.13 wind 5 43200 < th dose independent rect. 6 1
3 127.83 wind 5 43200 > th dose dependent rect. 6 1
4 128.18 wind 9 43200 > th dose dependent rect. 20 10
8 128.85 atmosphere 995 43200 > th dose independent rect. 8 23
9 128.85 atmosphere 995 43200 > th dose independent rect. 14 23
10 128.86 atmosphere 995 43200 > th dose independent rect. 10 23
13 128.89 atmosphere 995 43200 > th dose independent rect. 12 23
15 128.92 atmosphere 995 43200 > th dose independent no NA NA
16 128.92 atmosphere 995 43200 < th dose independent rect. 14 22
18 128.92 atmosphere 995 43200 > th dose independent rect. 20 23
19 128.93 atmosphere 995 43200 < th dose independent rect. 9 21
25 128.94 atmosphere 995 43200 > th dose independent rect. 1 23
32 128.97 atmosphere 995 43200 > th dose independent rect. 3 23
40 129.00 wind 9 43200 > th dose independent rect. 20 10
53 129.04 atmosphere 995 43200 < th dose dependent rect. 14 10
96 129.24 wind 9 43200 < th dose independent rect. 20 10
106 129.30 atmosphere 995 43200 > th dose independent rect. 1 16
113 129.34 atmosphere 995 43200 < th dose independent rect. 1 23
132 129.38 atmosphere 995 43200 < th dose independent no NA NA
134 129.38 atmosphere 995 43200 < th dose independent rect. 22 21
157 129.46 atmosphere 995 43200 > th dose independent rect. 3 13
211 129.67 atmosphere 995 43200 < th dose independent rect. 4 12
224 129.73 atmosphere 995 43200 < th dose independent rect. 2 15
238 129.80 atmosphere 995 43200 > th dose independent sin 2 NA
251 129.90 atmosphere 995 43200 > th dose independent rect. 5 10
284 130.16 atmosphere 995 43200 < th dose independent sin 2 NA
301 130.29 wind 3 43200 < th dose independent rect. 4 1
322 130.48 atmosphere 995 43200 < th dose independent sin 19 NA
323 130.49 wind 3 43200 > th dose independent rect. 4 1
340 130.57 atmosphere 995 43200 > th dose independent sin 19 NA
347 130.64 humidity 80 14400 < th dose independent rect. 18 1
370 130.83 wind 5 43200 < th dose independent rect. 2 14
375 130.85 atmosphere 995 43200 > th dose independent rect. 12 1
376 130.85 atmosphere 1000 43200 < th dose dependent rect. 7 2
387 130.91 atmosphere 995 43200 < th dose independent rect. 12 3
401 130.97 wind 5 43200 > th dose independent rect. 2 14
403 130.97 atmosphere 995 43200 < th dose dependent rect. 13 3
407 130.98 atmosphere 995 43200 > th dose independent rect. 10 5
415 131.02 humidity 80 14400 > th dose independent rect. 18 1
419 131.03 atmosphere 995 43200 < th dose independent rect. 10 6
435 131.08 wind 5 43200 < th dose independent sin 3 NA
440 131.09 wind 3 43200 > th dose independent rect. 3 3
446 131.10 wind 3 43200 < th dose independent rect. 3 3
481 131.26 wind 5 43200 > th dose independent sin 3 NA
493 131.30 wind 9 43200 < th dose independent rect. 19 5
548 131.46 wind 9 43200 > th dose independent rect. 19 6
577 131.54 wind 3 43200 > th dose dependent sin 4 NA
668 131.73 wind 3 43200 > th dose dependent rect. 2 13
689 131.83 wind 1 43200 > th dose dependent rect. 3 7
706 131.91 wind 5 43200 < th dose independent rect. 21 20
730 132.00 wind 5 43200 > th dose independent rect. 21 20
773 132.13 wind 9 43200 < th dose dependent rect. 3 7
803 132.25 wind 7 43200 < th dose dependent rect. 3 9
809 132.26 atmosphere 1000 43200 < th dose dependent sin 1 NA
822 132.29 wind 3 43200 > th dose independent rect. 3 7
892 132.47 wind 3 43200 > th dose dependent rect. 19 13
896 132.47 wind 3 43200 > th dose dependent rect. 20 19
900 132.49 wind 3 43200 < th dose independent rect. 3 7
902 132.49 wind 3 43200 > th dose dependent rect. 18 16
914 132.55 wind 3 43200 > th dose dependent rect. 18 18
945 132.63 wind 5 43200 > th dose dependent rect. 19 21
967 132.71 atmosphere 1000 43200 < th dose independent rect. 17 1
999 132.77 wind 5 43200 > th dose independent rect. 15 21