Os01g0179400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0179400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.55 | 0.28 | 9.52 | 0.597 | 0.312 | -0.0619 | -0.185 | 2.75 | 0.139 | 5.8 | 20.36 | 1623 | -- | -- |
| 41.75 | 0.303 | 9.63 | -0.237 | 0.387 | 0.248 | -0.2 | -- | -0.109 | 5.11 | 20.36 | 1623 | -- | -- |
| 35.62 | 0.278 | 9.52 | 0.601 | 0.314 | -0.0628 | -- | 2.79 | 0.141 | 5.9 | 20.44 | 1676 | -- | -- |
| 40.93 | 0.3 | 9.62 | -0.234 | 0.413 | 0.359 | -- | -- | -0.077 | 5.12 | 26.3 | 47520 | -- | -- |
| 40.61 | 0.297 | 9.52 | 0.622 | -- | -0.0706 | -- | 2.83 | 0.156 | -- | 20.82 | 1646 | -- | -- |
| 42.72 | 0.306 | 9.62 | -0.184 | 0.323 | -- | -0.203 | -- | -0.0671 | 5.77 | -- | -- | -- | -- |
| 42.81 | 0.306 | 9.61 | -0.185 | 0.323 | -- | -- | -- | -0.0661 | 5.9 | -- | -- | -- | -- |
| 47.76 | 0.322 | 9.63 | -0.308 | -- | 0.134 | -- | -- | -0.104 | -- | 32.4 | 47520 | -- | -- |
| 42.32 | 0.305 | 9.61 | -- | 0.394 | 0.304 | -- | -- | -0.0501 | 5.24 | 26.3 | 47520 | -- | -- |
| 48.21 | 0.324 | 9.62 | -0.175 | -- | -- | -- | -- | -0.0587 | -- | -- | -- | -- | -- |
| 43.72 | 0.309 | 9.61 | -- | 0.32 | -- | -- | -- | -0.0455 | 5.93 | -- | -- | -- | -- |
| 48.11 | 0.323 | 9.61 | -- | -- | -0.153 | -- | -- | 0.00658 | -- | 7.247 | 47520 | -- | -- |
| 49.02 | 0.327 | 9.62 | -- | -- | -- | -- | -- | -0.0392 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.16 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 2 | 34.28 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 5 | 34.39 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 9 | 34.47 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 14 | 34.53 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 25 | 34.58 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 35 | 34.60 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 45 | 34.63 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 53 | 34.66 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 4 | NA |
| 63 | 34.66 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 86 | 34.69 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 4 | NA |
| 183 | 34.81 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 236 | 34.86 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 257 | 34.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 268 | 34.88 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 272 | 34.89 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 474 | 35.02 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 483 | 35.02 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 522 | 35.05 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 667 | 35.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 689 | 35.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 704 | 35.21 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 734 | 35.24 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 757 | 35.26 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 850 | 35.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 905 | 35.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 908 | 35.46 | temperature | 25 | 1440 | > th | dose dependent | sin | 12 | NA |
| 909 | 35.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 18 |
| 946 | 35.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 15 |