BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0179400 Os01g0179400|AK063507
(1022 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25660.1 | chr2:10916456-10927390 REVERSE LENGTH=2167 1376 0.0
>AT2G25660.1 | chr2:10916456-10927390 REVERSE LENGTH=2167
Length = 2166
Score = 1376 bits (3562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/1041 (65%), Positives = 825/1041 (79%), Gaps = 26/1041 (2%)
Query: 1 MLAPQSTGFLSISPDSIMLNATGRPDENFSIEVNVPLFFGTHEAIQDGRLLSIFLQKGQL 60
+LAPQ +G LS+S D + L+A GRPDE+ +++ PL + E +Q G+LLS LQKGQL
Sbjct: 1131 ILAPQLSGRLSVSRDHVKLDAAGRPDESLTLDFIGPLQPNSDENVQSGKLLSFSLQKGQL 1190
Query: 61 RSNICYHPENLTSLEVRNLPLDELEFASLRGFVQKAELQLNFQKRRGHGLLSVIRPKFSG 120
R+N C+ P+ +LE+RN PLDELE ASLRG +QKAE+QLN QKRRGHGLLSVIRPKFSG
Sbjct: 1191 RANACFQPQQSATLEIRNFPLDELELASLRGLIQKAEIQLNLQKRRGHGLLSVIRPKFSG 1250
Query: 121 MLGESLDIAARWSGDV-----------ITMEKSVLEQANSKYELQGEYVFPGTRDRFPME 169
+LGE+LD+A RWSGDV IT+EK++LEQ+NS+YELQGEYV PG+RDR +
Sbjct: 1251 VLGEALDVAVRWSGDVCFMLSGRLEVMITVEKTILEQSNSRYELQGEYVLPGSRDRDLGQ 1310
Query: 170 SQSNGFIEKAXXXXXXXXXXXXXXXXXXLEVPGAEVAEMLPLARLLSRSTDPAIRSRSKE 229
++ F+ +A LEVP AEVAEMLPLARLLSRSTDPA+ SRSK+
Sbjct: 1311 KEAGSFLMRAMTGHLGSVISSMGRWRMRLEVPKAEVAEMLPLARLLSRSTDPAVHSRSKD 1370
Query: 230 LFMQTLHSVGFNAESLRDQLKALEMYPDWLDDDTIEDITLPGLAELRGYWRGSLDASGGG 289
LF+Q++ ++ AE+LRD L+ + Y + +ED++LPGLAEL+G+W GSLDASGGG
Sbjct: 1371 LFIQSVQNLCLQAENLRDLLEEIRGYYTPPSEVVLEDLSLPGLAELKGHWHGSLDASGGG 1430
Query: 290 NGDTMADFDFNGEDWEWGTYKTQRVLASGSFSNNDGLRLDKLFIQKDNATLHADGSILGP 349
NGDT+A+FDF+G+DWEWGTYKTQRVLA+GS++N+DGLRL ++ IQK NATLHADG++LGP
Sbjct: 1431 NGDTLAEFDFHGDDWEWGTYKTQRVLATGSYNNDDGLRLKEMLIQKGNATLHADGTLLGP 1490
Query: 350 LTNLHFAVLNFPVGLIPALVQAIESSTTDSIHFLRQWLTPIKGILHMEGDLRGTLAKPEC 409
TNLHFAVLNFPV LIP LV+ +ESS TD +H LR+ L+PIKGILHMEGDLRG+L KPEC
Sbjct: 1491 KTNLHFAVLNFPVSLIPTLVEVVESSATDIVHSLRKLLSPIKGILHMEGDLRGSLEKPEC 1550
Query: 410 DVQXXXXXXXXXXXXXXXAEVLASVTPTSRFVFDANFEPTIQSGHVNIQGSVPVTYVDSN 469
DVQ AEV AS+T SRF+F++NFEP +Q+GHV+IQGSVPV++ N
Sbjct: 1551 DVQVRLLDGAVGGIDLGRAEVFASLTSNSRFLFNSNFEPFVQNGHVHIQGSVPVSFSQKN 1610
Query: 470 SIEEDLEGGDGKQGIIRIPVWAKDRGLTNDISETRIMRDKPDEGWEFQLAESLKGLSWNM 529
E ++ D + G ++IP WAK++ + E R RD+ +E W+ QLAESLKGL WN+
Sbjct: 1611 MSEGEVSETD-RGGAVKIPSWAKEK----EDDEKRTSRDRSEERWDSQLAESLKGLYWNI 1665
Query: 530 LEPGEVRINADIKDGGMTLITALSPYSNWLQGYAEVLLQVKGTVDHPVVDGSASFHRATV 589
L+ GEVR+ ADIKDGGMTL+TA+SPY+NWLQG A++ LQV GTVDHPV+DGSASFHRA++
Sbjct: 1666 LDAGEVRLEADIKDGGMTLLTAISPYANWLQGNADIRLQVGGTVDHPVLDGSASFHRASI 1725
Query: 590 ASPFLRTPLTNFAGNVHVISNRLCISSMESRVGRKGRLSMKGTLPLHNIEPSANDKIELK 649
+SP LR PLTNF G +HV SNRLCI+S+ESRV RKG+L +KG LPL + E SA D IELK
Sbjct: 1726 SSPVLRKPLTNFGGTLHVKSNRLCITSLESRVSRKGKLVVKGNLPLRSNEASAGDGIELK 1785
Query: 650 CEVLDIRAKNILSGQVDSQLQVTGSILRPDVSGMIRLSHGEAYLPHDKGNGAVA-TRLSS 708
CEVL++RAKN LS QVD+QLQ+TGS+L+P +SG I+LS GEAYLPHDKG GA RL++
Sbjct: 1786 CEVLEVRAKNFLSCQVDTQLQITGSMLQPTISGNIKLSQGEAYLPHDKGGGAAPLNRLAA 1845
Query: 709 NKSISVP-AGFDQRTVSRDVSHFLGSLSTSP-------DGQQSETERTPEHGSFKPNIDA 760
N+ S+P A +Q SR + F G+ S G+ + E+ E KPN+D
Sbjct: 1846 NQ-YSIPGAAINQAVSSRYFARFFGTERASSGMKFSQSTGKSNSVEKEIEEVKMKPNMDI 1904
Query: 761 RLNDLKLTFGPELRIVYPLILNFAVSGDLELNGMVHPKYIRPKGVLTFENGEVNLVATQV 820
RL+D+KL GPELRI+YPLILNFAVSG+LEL+GM HPK+I+PKGVLTFENG+VNLVATQV
Sbjct: 1905 RLSDMKLVLGPELRIMYPLILNFAVSGELELDGMAHPKFIKPKGVLTFENGDVNLVATQV 1964
Query: 821 RLKNDHLNVAKFEPDLGLDPILDLVLVGSEWQFKIQSRASMWQDNLVVTSTRSVDQDVLS 880
RLK +HLNVAKFEP+ GLDP+LDL LVGSEWQF++QSRAS WQD LVVTSTRSV+QD LS
Sbjct: 1965 RLKREHLNVAKFEPEHGLDPLLDLALVGSEWQFRVQSRASNWQDKLVVTSTRSVEQDALS 2024
Query: 881 PSEAAKVFESQLAESLLEGDGQLAFKKLATATLETLMPRIEGKGEFGQARWRLVYAPQIP 940
PSEAAKVFESQLAES+LEGDGQLAFKKLATATL T+MPRIEGKGEFGQARWRLVYAPQIP
Sbjct: 2025 PSEAAKVFESQLAESILEGDGQLAFKKLATATLGTIMPRIEGKGEFGQARWRLVYAPQIP 2084
Query: 941 SLLSVDPTVDPLKSLANNISFATEVEVQLGKRLQASVVRQMKDSEMAMQWSLIYQLTSRL 1000
SLLSVDPTVDPLKSLA+NISF TEVEVQLGKRLQASVVRQMKDSEMAMQW+LIYQLTSRL
Sbjct: 2085 SLLSVDPTVDPLKSLASNISFGTEVEVQLGKRLQASVVRQMKDSEMAMQWTLIYQLTSRL 2144
Query: 1001 RVLFQSTPSNRLLFEYSATSQ 1021
RVL QS PS RLLFEYSATSQ
Sbjct: 2145 RVLLQSAPSKRLLFEYSATSQ 2165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 21,193,187
Number of extensions: 891206
Number of successful extensions: 2100
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2095
Number of HSP's successfully gapped: 1
Length of query: 1022
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 914
Effective length of database: 8,145,641
Effective search space: 7445115874
Effective search space used: 7445115874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)