Os01g0179200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Syntaxin/epimorphin family protein.
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Os01g0179200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Syntaxin/epimorphin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.34 | 0.217 | 11.5 | 1.07 | 0.122 | -0.923 | -0.0945 | 0.183 | 0.345 | 22.7 | 21.49 | 19 | -- | -- |
| 21.25 | 0.215 | 11.5 | 1.04 | 0.128 | -0.915 | -0.107 | -- | 0.333 | 22.5 | 22.38 | 18 | -- | -- |
| 21.23 | 0.215 | 11.5 | 1.08 | 0.132 | -0.935 | -- | 0.311 | 0.34 | 22.2 | 22.67 | 18 | -- | -- |
| 21.28 | 0.215 | 11.5 | 1.03 | 0.138 | -0.911 | -- | -- | 0.318 | 22.1 | 23.08 | 18 | -- | -- |
| 22.1 | 0.219 | 11.5 | 1.15 | -- | -0.993 | -- | 0.439 | 0.364 | -- | 22.11 | 12 | -- | -- |
| 34.25 | 0.274 | 11.5 | 0.854 | 0.425 | -- | 0.0299 | -- | 0.183 | 1.66 | -- | -- | -- | -- |
| 34.26 | 0.274 | 11.5 | 0.853 | 0.425 | -- | -- | -- | 0.182 | 1.66 | -- | -- | -- | -- |
| 22.19 | 0.219 | 11.5 | 1.05 | -- | -0.972 | -- | -- | 0.341 | -- | 22.07 | 13 | -- | -- |
| 46.95 | 0.321 | 11.5 | -- | 0.216 | -0.649 | -- | -- | 0.134 | 0.425 | 24.8 | 9 | -- | -- |
| 45.29 | 0.314 | 11.5 | 0.871 | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
| 53.45 | 0.342 | 11.5 | -- | 0.441 | -- | -- | -- | 0.0874 | 1.72 | -- | -- | -- | -- |
| 48.97 | 0.327 | 11.5 | -- | -- | -0.8 | -- | -- | 0.165 | -- | 24.26 | 14 | -- | -- |
| 65.29 | 0.377 | 11.5 | -- | -- | -- | -- | -- | 0.0953 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.14 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 21.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 5 | 21.24 | temperature | 20.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 7 | 21.36 | temperature | 10.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 15 | 21.51 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 23 | 21.60 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 37 | 21.78 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 45 | 21.82 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 49 | 21.88 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 59 | 21.91 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 60 | 21.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 72 | 21.98 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 81 | 22.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 85 | 22.02 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 90 | 22.04 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 92 | 22.05 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 94 | 22.06 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 101 | 22.09 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 109 | 22.10 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 112 | 22.11 | temperature | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 119 | 22.14 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 127 | 22.18 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 156 | 22.23 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 270 | 22.43 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 346 | 22.56 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 353 | 22.56 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 525 | 22.80 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 526 | 22.81 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 527 | 22.81 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 778 | 23.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 975 | 23.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 985 | 23.47 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 986 | 23.47 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |