BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0179200 Os01g0179200|AK106425
         (344 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24350.2  | chr3:8837733-8839402 FORWARD LENGTH=362            345   2e-95
AT5G05760.1  | chr5:1729111-1730903 REVERSE LENGTH=337            273   1e-73

>AT3G24350.2 | chr3:8837733-8839402 FORWARD LENGTH=362
          Length = 361

 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/307 (62%), Positives = 225/307 (73%), Gaps = 23/307 (7%)

Query: 60  SEFNRRASKIGLGIHQTSQKLARLAK--------------LAKRTSVFDDPTVEIQELTA 105
           SEFN+RAS IGL I+QTSQKL++LAK              +AKRTSVFDDPT EIQELT 
Sbjct: 56  SEFNKRASHIGLAINQTSQKLSKLAKRIRMVLRSRTDLFSVAKRTSVFDDPTQEIQELTV 115

Query: 106 VIKKDITALNSAVVDLQVLCNSQNESGNLSKD--TTNHSTTVVDNLKNRLMSATKEFKEV 163
           VIK++I+ALNSA+VDLQ+  +SQN+ GN S+D   + HS TVVD+LK RLM  TKEFK+V
Sbjct: 116 VIKQEISALNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDV 175

Query: 164 LTMRTENLKVHENRRQMFXXXXXXXXXXPFVRQRPLVTRDGPESSVPPAPWASDSATTP- 222
           LTMRTEN+KVHE+RRQ+F          PFVRQRPL  +     SVP  PWA+ S+++  
Sbjct: 176 LTMRTENMKVHESRRQLFSSNASKESTNPFVRQRPLAAKAAASESVP-LPWANGSSSSSS 234

Query: 223 -LFQRKKTNGDHGAXXXXXQPFMQQQLVQ----QDSYMQSRAEALQNVESTIHELSNIFT 277
            L   K   G+        Q   QQQ  Q    QD+YMQ RAEAL  VESTIHELS+IFT
Sbjct: 235 QLVPWKPGEGESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFT 294

Query: 278 QLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLM 337
           QLATMVSQQGE+AIRID+NM+DTLANVEGAQ QL +YLNSISSNRWLMMKIFFVL+ FLM
Sbjct: 295 QLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRWLMMKIFFVLIAFLM 354

Query: 338 IFIFFVA 344
           IF+FFVA
Sbjct: 355 IFLFFVA 361



>AT5G05760.1 | chr5:1729111-1730903 REVERSE LENGTH=337
          Length = 336

 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/309 (48%), Positives = 203/309 (65%), Gaps = 33/309 (10%)

Query: 56  ASAHSEFNRRASKIGLGIHQTSQKLARLAKLAKRTSVFDDPTVEIQELTAVIKKDITALN 115
           +S  SEFN++AS+IGLGI +TSQK+ RLAKLAK++++F+D TVEIQELT +I+ DIT LN
Sbjct: 41  SSPGSEFNKKASRIGLGIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLN 100

Query: 116 SAVVDLQVLCNSQNESGNLSKDTTNHSTTVVDNLKNRLMSATKEFKEVLTMRTENLKVHE 175
            A+ DLQ L N +   GN S+D   H T V D+LK RLM ATK+ ++VLT R+EN+K HE
Sbjct: 101 MALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHE 160

Query: 176 NRRQMFXXXXXXXX------------------XXPFVR-QRPLVTRDGPESSVPPAPWAS 216
           NR+Q+F                            PF   Q+PL         +PP     
Sbjct: 161 NRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFGNLQQPL---------LPPL---- 207

Query: 217 DSATTPLFQ-RKKTNGDHGAXXXXXQPFMQQQLVQQDSYMQSRAEALQNVESTIHELSNI 275
           ++   P  Q R+++  ++          +QQ + +Q++Y QSRA AL +VES I ELS I
Sbjct: 208 NTGAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAVALHSVESRITELSGI 267

Query: 276 FTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVF 335
           F QLATMV+QQGELAIRID+NMD++L NVEGA+  LL++L  ISSNRWLMMKIF V+++F
Sbjct: 268 FPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRWLMMKIFAVIILF 327

Query: 336 LMIFIFFVA 344
           L++F+FFVA
Sbjct: 328 LIVFLFFVA 336



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,283,926
Number of extensions: 167504
Number of successful extensions: 708
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)