Os01g0178900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0178900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.57 | 0.699 | 7.91 | 3.54 | 0.823 | 1.03 | -0.861 | -1.09 | 0.947 | 0.81 | 20.5 | 964 | -- | -- |
| 224.09 | 0.697 | 7.89 | 3.7 | 0.813 | 1.23 | -1.06 | -- | 0.979 | 0.699 | 20.31 | 1060 | -- | -- |
| 224.36 | 0.698 | 7.92 | 3.51 | 0.823 | 1.04 | -- | -1.36 | 0.93 | 0.64 | 20.6 | 967 | -- | -- |
| 229.26 | 0.705 | 7.88 | 3.74 | 0.825 | 1.24 | -- | -- | 0.989 | 0.562 | 20.4 | 1060 | -- | -- |
| 265.33 | 0.759 | 7.92 | 3.49 | -- | 1.25 | -- | -1.28 | 0.915 | -- | 20.5 | 957 | -- | -- |
| 260.35 | 0.756 | 7.82 | 4.19 | 0.967 | -- | -1.26 | -- | 1.25 | 0.718 | -- | -- | -- | -- |
| 266.9 | 0.765 | 7.82 | 4.24 | 0.969 | -- | -- | -- | 1.26 | 0.498 | -- | -- | -- | -- |
| 269.29 | 0.764 | 7.87 | 3.7 | -- | 1.47 | -- | -- | 0.962 | -- | 20.3 | 944 | -- | -- |
| 322.41 | 0.836 | 8.09 | -- | 0.934 | 3.45 | -- | -- | 0.086 | 0.488 | 17.23 | 47520 | -- | -- |
| 325.88 | 0.844 | 7.8 | 4.27 | -- | -- | -- | -- | 1.27 | -- | -- | -- | -- | -- |
| 739.67 | 1.27 | 7.93 | -- | 1.03 | -- | -- | -- | 0.786 | 0.703 | -- | -- | -- | -- |
| 375.68 | 0.903 | 8.08 | -- | -- | 3.5 | -- | -- | 0.0531 | -- | 17.4 | 47143 | -- | -- |
| 806.57 | 1.33 | 7.91 | -- | -- | -- | -- | -- | 0.801 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.19 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 219.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 4 | 220.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 7 | 220.28 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 8 | 220.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 14 | 220.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 26 | 221.33 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 33 | 221.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 37 | 221.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 40 | 221.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 43 | 222.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 80 | 222.70 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 22 |
| 92 | 222.86 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 21 |
| 107 | 223.00 | temperature | 20 | 720 | < th | dose independent | rect. | 14 | 17 |
| 152 | 223.50 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 23 |
| 173 | 223.65 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 174 | 223.65 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 179 | 223.67 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 184 | 223.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 186 | 223.74 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 193 | 223.77 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 200 | 223.80 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 21 |
| 226 | 223.90 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 231 | 223.95 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 21 |
| 247 | 224.05 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 298 | 224.27 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 326 | 224.42 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 386 | 224.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 401 | 224.69 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 23 |
| 409 | 224.74 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 5 |
| 418 | 224.78 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 594 | 225.43 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 643 | 225.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 654 | 225.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 814 | 226.32 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 838 | 226.41 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 839 | 226.42 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 872 | 226.54 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 956 | 226.92 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 21 | 2 |