BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0178900 Os01g0178900|AK110770
(526 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055 89 5e-18
AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425 70 3e-12
AT1G69550.1 | chr1:26148836-26153374 REVERSE LENGTH=1401 56 6e-08
AT2G17050.1 | chr2:7410835-7415610 REVERSE LENGTH=1356 52 9e-07
>AT3G14470.1 | chr3:4857940-4861104 FORWARD LENGTH=1055
Length = 1054
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 95/212 (44%), Gaps = 27/212 (12%)
Query: 3 EASNSGVREKYRLVELNLLWNS-------NLKSRSSDVEISVLEGLQPHPNLRHLRIINY 55
+A+ + + K L E++ +W + N + E V E L+PH ++ L I Y
Sbjct: 716 DAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERY 775
Query: 56 RGSTSPTWLATDLHTKYLESLYLHDCSGWEMLPPLGQLPYLRRLHFTGMGSILSIGPELY 115
+G P WL+ D + + L +C LP LGQLP L+ LH +GM + SIG + Y
Sbjct: 776 KGRRFPDWLS-DPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFY 834
Query: 116 GSGSLMG------FPCLEELHFENMLEWRSWCGVE--KECFFPKLLTLTIMDCPSLQ-ML 166
S + F LE L F+N+ +W+ W V + FP L L I+ CP L L
Sbjct: 835 FSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPELTGTL 894
Query: 167 PVEQWSDQVNYKWFPCLEMLDIQNCPSLDQLP 198
P + P L L I C LD P
Sbjct: 895 PT----------FLPSLISLHIYKCGLLDFQP 916
>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
Length = 1424
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 3 EASNSGVREKYRLVELNLLWN--------SNLKSRSSDVEISVLEGLQPHPNLRHLRIIN 54
EA ++G++ K L L L W + + + D + VL L+PHP+L+ I +
Sbjct: 710 EAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACD-QKEVLRMLEPHPHLKTFCIES 768
Query: 55 YRGSTSPTWLATDLHTKYLESLYLHDCSGWEMLPPLGQLPYLRRLHFTGMGSILSIGPE- 113
Y+G P WL D + S+ L C+ LPP+GQLP L+ L + +G +
Sbjct: 769 YQGGAFPKWLG-DSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDF 827
Query: 114 LYGSGSLMGFP--CLEELHFENMLEWRSW-CGVEKECFFPKLLTLTIMDCPSLQ 164
+G + G P L+ L F M W W C ++ FP L L I CPSL+
Sbjct: 828 FFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGIFPCLQKLIIQRCPSLR 881
>AT1G69550.1 | chr1:26148836-26153374 REVERSE LENGTH=1401
Length = 1400
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 195/479 (40%), Gaps = 114/479 (23%)
Query: 39 EGLQPHPNLRHLRIINYRGSTSPTWLATDLHTKYLESLYLHDCSGWEMLPP-LGQLPYLR 97
EG+QP L +L++++ R S+ L L + L DCS LP +G ++
Sbjct: 687 EGIQP---LVNLKVMDLRYSSHLKELPNLSTAINLLEMVLSDCSSLIELPSSIGNATNIK 743
Query: 98 RLHFTGMGSILSIGPELYGSGSLMGFPCLEELHFENMLEWRSWCGVEKECFFPKLLTLTI 157
L G S+L + + G+L+ P L+ + +++E S G L L +
Sbjct: 744 SLDIQGCSSLLKLPSSI---GNLITLPRLDLMGCSSLVELPSSIGN-----LINLPRLDL 795
Query: 158 MDCPSLQMLPVEQWSDQVNYKWFPCLEMLDIQNCPSLDQLPPLPHSSTLSRISLKN---A 214
M C SL LP + +N LE C SL +LP SS + ISLK
Sbjct: 796 MGCSSLVELP-SSIGNLIN------LEAFYFHGCSSLLELP----SSIGNLISLKILYLK 844
Query: 215 GIISLMELNDE--------EIVISGISDLVLERQLFLPFHNLRSLKSFSIPGCDNFMVLP 266
I SL+E+ + +SG S LV +L NL +LK + GC + + LP
Sbjct: 845 RISSLVEIPSSIGNLINLKLLNLSGCSSLV---ELPSSIGNLINLKKLDLSGCSSLVELP 901
Query: 267 LKGQGKHDISEVSTTMDDSGSSLSNISELKICGSGISEDVLHEILSNVGILDCLSIKDCP 326
L S +L N+ EL + +C S+ + P
Sbjct: 902 L-----------------SIGNLINLQELYLS-------------------ECSSLVELP 925
Query: 327 QVTSLELNPMVRLDYLIIEDCLELTTL-KCMKTLIHLTELTVLRSPKFMEGWKNLVEEAE 385
+ ++ L L + +C L L + LI+L EL ++ +LVE
Sbjct: 926 S----SIGNLINLKTLNLSECSSLVELPSSIGNLINLQEL-------YLSECSSLVELP- 973
Query: 386 GSHLRITASLKRLHIDDLSFLTMPICRTLGYLQYLMIDTDQQTICLTPEQEQAFGTLTSL 445
S + +LK+L + S L E + G L +L
Sbjct: 974 -SSIGNLINLKKLDLSGCSSLV--------------------------ELPLSIGNLINL 1006
Query: 446 KTLVFSECSYLRSLPATLHQISSLKSLHLSSCESIDSLP-HLGLPGSLERLFIAGCDLL 503
KTL SECS L LP+++ + +L+ L+LS C S+ LP +G +L++L ++GC L
Sbjct: 1007 KTLNLSECSSLVELPSSIGNLINLQELYLSECSSLVELPSSIGNLINLKKLDLSGCSSL 1065
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 127/459 (27%), Positives = 201/459 (43%), Gaps = 71/459 (15%)
Query: 73 LESLYLHDCSGWEMLPP-LGQLPYLRRLHFTGMGSILSIGPELYGSGSLMGFPCLEELHF 131
LE+ Y H CS LP +G L L+ L+ + S++ I + G+L+ L
Sbjct: 814 LEAFYFHGCSSLLELPSSIGNLISLKILYLKRISSLVEIPSSI---GNLINLKLLNLSGC 870
Query: 132 ENMLEWRSWCGVEKECFFPKLLTLTIMD---CPSLQMLPVEQWSDQVNYKWFPCLEMLDI 188
+++E S G L+ L +D C SL LP+ + +N L+ L +
Sbjct: 871 SSLVELPSSIG--------NLINLKKLDLSGCSSLVELPL-SIGNLIN------LQELYL 915
Query: 189 QNCPSLDQLPPLPHSSTLSRISLKNAGII---SLMEL--------NDEEIVISGISDLVL 237
C SL +LP SS + I+LK + SL+EL N +E+ +S S LV
Sbjct: 916 SECSSLVELP----SSIGNLINLKTLNLSECSSLVELPSSIGNLINLQELYLSECSSLV- 970
Query: 238 ERQLFLPFHNLRSLKSFSIPGCDNFMVLPLK-----GQGKHDISEVSTTMD--DSGSSLS 290
+L NL +LK + GC + + LPL ++SE S+ ++ S +L
Sbjct: 971 --ELPSSIGNLINLKKLDLSGCSSLVELPLSIGNLINLKTLNLSECSSLVELPSSIGNLI 1028
Query: 291 NISELKI--CGSGISEDVLHEILSNVGILDCLSIKDCPQVTSLELN--PMVRLDYLIIED 346
N+ EL + C S + L + N+ L L + C + L L+ ++ L L +
Sbjct: 1029 NLQELYLSECSSLVE---LPSSIGNLINLKKLDLSGCSSLVELPLSIGNLINLKTLNLSG 1085
Query: 347 CLELTTLKCMKTLIHLTELTVLRSPKFMEGWKNLVEEAEGSHLRITASLKRLHIDDLSFL 406
C L L ++L +L + G +LVE S + +LK+L + S L
Sbjct: 1086 CSSLVELPSSIGNLNLKKLD-------LSGCSSLVELP--SSIGNLINLKKLDLSGCSSL 1136
Query: 407 T-MPIC-RTLGYLQYLMIDTDQQTICLTPEQEQAFGTLTSLKTLVFSECSYLRSLPATLH 464
+P+ L LQ L + + E + G L +L+ L SECS L LP+++
Sbjct: 1137 VELPLSIGNLINLQELYLSECSSLV----ELPSSIGNLINLQELYLSECSSLVELPSSIG 1192
Query: 465 QISSLKSLHLSSCESIDSLPHLGLPGSLERLFIAGCDLL 503
+ +LK L L+ C + SLP LP SL L C+ L
Sbjct: 1193 NLINLKKLDLNKCTKLVSLPQ--LPDSLSVLVAESCESL 1229
>AT2G17050.1 | chr2:7410835-7415610 REVERSE LENGTH=1356
Length = 1355
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 200/480 (41%), Gaps = 69/480 (14%)
Query: 46 NLRHLRIINYRGSTSPTWLATDLHTKYLESLYLHDCSGWEMLPPLGQLPYLRRLHFTGMG 105
NL L+++ S + + +K +E + L C+ + P L +LR ++ +G
Sbjct: 457 NLEMLKMVRLSHSQDLVEIEELIKSKNIEVIDLQGCTKIQSFPATRHLQHLRVINLSGCV 516
Query: 106 SILSIGPELYGSGSLMGFP-CLEELHFENMLEWRSWCGVEKECFFPKLLTLTIMD---CP 161
I S E GFP L+EL+ S G+ + L +L ++D C
Sbjct: 517 EIKSTQLE-----EFQGFPRNLKELYL-------SGTGIREVTSSIHLSSLEVLDLSNCK 564
Query: 162 SLQMLPVEQWSDQVNYKWFPCLEMLDIQNCPSLDQLPPLPHSSTLSRISLKNAGI----I 217
LQ LP+ + + L L + C L + LP + L + L I
Sbjct: 565 RLQNLPMGKGN-------LASLIKLMLSGCSKLQNIQDLP--TNLKELYLAGTSIREVPS 615
Query: 218 SLMELNDEEIVISGISDLVLERQLFLPFHNLRSLKSFSIPGCDNFMVLPLKGQGKHDISE 277
S+ L ++V+ + + L + NL SL + GC +P + ++
Sbjct: 616 SICHLT--QLVVFDAENCKKLQDLPMGMGNLISLTMLILSGCSELRSIPDLPRNLRHLNL 673
Query: 278 VSTTMDDSGSSLSNISELKICGSGISEDVLHEILSNVGILDCLSIKDCPQVTSLELNPMV 337
T + SS ++++L +S D+ H L L ++ V ++L+ +
Sbjct: 674 AETPIKKLPSSFEDLTKL------VSLDLNH-----CERLQHLQMESFESVVRVDLSGCL 722
Query: 338 RLDYLI---IEDCLELTTLKCMKTLIHLT---ELTVLRSPKFMEGWKNLVEEAEGSHLR- 390
L Y++ ++D +L K ++H T +T++ +E W+ H+
Sbjct: 723 ELKYILGFSLQDITQLHEDGTDKVMLHGTPPCNVTLI-----LETWRT-------RHVTP 770
Query: 391 ITASLKRLHIDDLSFLTMP----ICRTLGYLQYLMIDTD-QQTICLTPEQEQAFGTLTSL 445
+ S + ++ + F+T P + +L + Y M+ + L Q L SL
Sbjct: 771 MEKSGSKFYLKLMPFVTTPYRSKLQSSLVFRMYAMVSLFLSKAYLLDIHIPQEICNLLSL 830
Query: 446 KTLVFSECSYLRSLPATLHQISSLKSLHLSSCESIDSLPHLGLPGSLERLFIAGCDLLRD 505
KTL S ++ + LP ++ Q +L+SL L C++++SLP LP SLE L GC L++
Sbjct: 831 KTLDLSGNNFGK-LPESIKQFRNLESLILCHCKNLESLPE--LPQSLEFLNAHGCVCLKN 887
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,946,944
Number of extensions: 522099
Number of successful extensions: 2708
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2617
Number of HSP's successfully gapped: 28
Length of query: 526
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 423
Effective length of database: 8,282,721
Effective search space: 3503590983
Effective search space used: 3503590983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)