Os01g0165000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DRE binding protein 2.
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Os01g0165000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DRE binding protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.66 | 0.357 | 10.1 | 0.496 | 0.37 | -0.677 | -0.184 | -0.0174 | 0.074 | 18.9 | 19.6 | 288 | -- | -- |
| 57.51 | 0.353 | 10.1 | 0.48 | 0.371 | -0.723 | -0.116 | -- | 0.0745 | 18.8 | 19.39 | 306 | -- | -- |
| 57.55 | 0.353 | 10.1 | 0.489 | 0.377 | -0.701 | -- | 0.00502 | 0.0768 | 18.8 | 19.4 | 306 | -- | -- |
| 57.54 | 0.353 | 10.1 | 0.483 | 0.371 | -0.722 | -- | -- | 0.0743 | 18.7 | 19.39 | 306 | -- | -- |
| 64.58 | 0.374 | 10.1 | 0.475 | -- | -0.728 | -- | 0.0407 | 0.048 | -- | 19.6 | 361 | -- | -- |
| 68.78 | 0.389 | 10.1 | 0.721 | 0.44 | -- | -0.0618 | -- | 0.182 | 18.3 | -- | -- | -- | -- |
| 68.78 | 0.388 | 10.1 | 0.722 | 0.44 | -- | -- | -- | 0.182 | 18.3 | -- | -- | -- | -- |
| 64.48 | 0.374 | 10.1 | 0.442 | -- | -0.814 | -- | -- | 0.0511 | -- | 19.4 | 377 | -- | -- |
| 63.02 | 0.37 | 10.1 | -- | 0.349 | -0.91 | -- | -- | 0.00805 | 18.7 | 19.3 | 376 | -- | -- |
| 78.83 | 0.415 | 10.1 | 0.71 | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
| 82.52 | 0.425 | 10.1 | -- | 0.43 | -- | -- | -- | 0.102 | 18.3 | -- | -- | -- | -- |
| 69.02 | 0.387 | 10.1 | -- | -- | -0.977 | -- | -- | -0.019 | -- | 19.38 | 389 | -- | -- |
| 92.13 | 0.448 | 10.1 | -- | -- | -- | -- | -- | 0.0939 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.58 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 15 |
| 11 | 56.88 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 23 | 57.12 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 16 |
| 48 | 57.35 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 51 | 57.35 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 63 | 57.44 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 64 | 57.44 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 68 | 57.47 | temperature | 20 | 10 | < th | dose dependent | sin | 5 | NA |
| 76 | 57.54 | temperature | 20 | 90 | > th | dose independent | sin | 7 | NA |
| 77 | 57.54 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 84 | 57.59 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 17 |
| 103 | 57.70 | temperature | 20 | 10 | > th | dose independent | sin | 7 | NA |
| 118 | 57.75 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 15 |
| 120 | 57.76 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 7 |
| 121 | 57.76 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 138 | 57.79 | temperature | 20 | 90 | < th | dose independent | sin | 7 | NA |
| 143 | 57.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 146 | 57.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 148 | 57.83 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 159 | 57.88 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 164 | 57.89 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 172 | 57.91 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 174 | 57.92 | temperature | 20 | 10 | < th | dose independent | sin | 6 | NA |
| 194 | 58.06 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 20 |
| 232 | 58.15 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 256 | 58.21 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 281 | 58.27 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 302 | 58.30 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 352 | 58.47 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 365 | 58.51 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 8 |
| 386 | 58.54 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 18 |
| 451 | 58.67 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 505 | 58.82 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 22 |
| 551 | 58.94 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 561 | 58.97 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 585 | 59.04 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 23 |
| 618 | 59.12 | temperature | 20 | 720 | > th | dose independent | sin | 14 | NA |
| 628 | 59.13 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 636 | 59.14 | temperature | 20 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 649 | 59.17 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 12 |
| 667 | 59.20 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 669 | 59.21 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 672 | 59.21 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 16 |
| 688 | 59.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 693 | 59.23 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 699 | 59.24 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 19 |
| 730 | 59.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 737 | 59.30 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 23 |
| 745 | 59.31 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 23 |
| 773 | 59.37 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 21 |
| 782 | 59.39 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 785 | 59.39 | temperature | 20 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 844 | 59.48 | temperature | 20 | 10 | < th | dose dependent | rect. | 20 | 17 |
| 937 | 59.61 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 952 | 59.63 | temperature | 20 | 10 | < th | dose dependent | no | NA | NA |
| 956 | 59.63 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 22 |
| 957 | 59.63 | temperature | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 973 | 59.64 | temperature | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |