Os01g0164600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os01g0164600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.52 | 0.299 | 13 | -1.72 | 0.834 | -0.538 | 1.02 | 0.271 | -0.507 | 8.77 | 45.68 | 1075 | -- | -- |
| 40.6 | 0.297 | 13 | -1.71 | 0.835 | -0.524 | 1.08 | -- | -0.5 | 8.76 | 45.21 | 1062 | -- | -- |
| 43.48 | 0.307 | 13.1 | -1.74 | 0.855 | -0.572 | -- | 0.942 | -0.514 | 8.74 | 44.47 | 1026 | -- | -- |
| 44.46 | 0.311 | 13 | -1.66 | 0.816 | -0.468 | -- | -- | -0.504 | 8.72 | 51.59 | 1086 | -- | -- |
| 68.15 | 0.384 | 13.1 | -1.74 | -- | 0.517 | -- | 0.658 | -0.524 | -- | 60 | 599 | -- | -- |
| 44.9 | 0.314 | 13 | -1.67 | 0.73 | -- | 1.04 | -- | -0.486 | 8.31 | -- | -- | -- | -- |
| 48.24 | 0.325 | 13 | -1.63 | 0.73 | -- | -- | -- | -0.487 | 8.23 | -- | -- | -- | -- |
| 68.19 | 0.385 | 13.1 | -1.63 | -- | 0.579 | -- | -- | -0.459 | -- | 59.4 | 576 | -- | -- |
| 82.74 | 0.424 | 13 | -- | 0.725 | -1.68 | -- | -- | -0.438 | 8.41 | -4.656 | 47520 | -- | -- |
| 77.66 | 0.412 | 13.1 | -1.63 | -- | -- | -- | -- | -0.478 | -- | -- | -- | -- | -- |
| 118.68 | 0.51 | 13 | -- | 0.722 | -- | -- | -- | -0.305 | 8.39 | -- | -- | -- | -- |
| 112.01 | 0.493 | 13.1 | -- | -- | -1.68 | -- | -- | -0.431 | -- | -14.36 | 47520 | -- | -- |
| 147.69 | 0.567 | 13 | -- | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 23 | 38.15 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 30 | 38.21 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 79 | 38.89 | humidity | 90 | 720 | > th | dose dependent | sin | 18 | NA |
| 88 | 38.95 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 106 | 39.07 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 118 | 39.13 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 122 | 39.15 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 124 | 39.16 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 15 |
| 125 | 39.16 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 127 | 39.17 | humidity | 90 | 720 | > th | dose independent | rect. | 11 | 13 |
| 134 | 39.18 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 147 | 39.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 153 | 39.24 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 158 | 39.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 176 | 39.31 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 7 |
| 209 | 39.41 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 224 | 39.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 260 | 39.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 263 | 39.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 351 | 39.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 394 | 39.74 | humidity | 90 | 720 | > th | dose independent | sin | 18 | NA |
| 412 | 39.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 414 | 39.77 | humidity | 90 | 720 | < th | dose independent | rect. | 13 | 11 |
| 431 | 39.80 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 15 |
| 473 | 39.86 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 474 | 39.86 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 491 | 39.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 499 | 39.90 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 578 | 40.00 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 652 | 40.07 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 782 | 40.22 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 794 | 40.23 | humidity | 90 | 720 | < th | dose independent | sin | 17 | NA |
| 935 | 40.38 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |