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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0158700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0495) R2 : 0.219
β1 : 1.06 (0.135) R2dD : 0.188 R2D : -0.665
β2 : -- (--) R2dC : -- R2C : --
β3 : 56.5 (5.42) R2dE : 61.1 R2E : -58.5
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 114 (11.2) R2dD*E : 57.6 R2D*E : -59.8
γ1 : -0.0226 (0.0599) R2dN8 : 0.000349 R2N8 : -0.501
σ : 0.526
deviance : 125.94
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.98
open length of G : 10

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.4 0.526 3.33 1.04 0.0895 55.5 -0.262 112 -0.0248 8.39 20 10 6.98 10
152.63 0.58 2.92 0.188 0.14 1.52 0.0165 -- -0.0374 7.38 20 10 6.98 10
125.43 0.526 3.33 1.05 0.0982 56.1 -- 113 -0.0246 7.21 20 10 6.98 10
144.92 0.561 2.92 0.283 0.114 1.74 -- -- -0.00709 5.59 23.89 15 6.94 9.17
125.94 0.526 3.34 1.06 -- 56.5 -- 114 -0.0226 -- 20 10 6.98 10
159.11 0.591 2.92 0.102 0.138 -- -0.356 -- -0.0615 9.76 -- -- -- --
159.42 0.591 2.92 0.0864 0.155 -- -- -- -0.0636 8.34 -- -- -- --
145.42 0.562 2.91 0.287 -- 1.83 -- -- 0.0176 -- 24.02 14 6.82 9.12
146.82 0.564 2.92 -- 0.117 1.62 -- -- -0.0253 5.38 23.92 14 7.02 9.65
160.75 0.592 2.93 0.0873 -- -- -- -- -0.062 -- -- -- -- --
159.62 0.591 2.93 -- 0.155 -- -- -- -0.0733 8.3 -- -- -- --
147.54 0.566 2.92 -- -- 1.61 -- -- -0.0227 -- 23.95 14 7.01 10.1
160.95 0.592 2.93 -- -- -- -- -- -0.0717 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.41 temperature 20 10 < th dose dependent rect. 7 10
19 126.55 temperature 20 30 < th dose dependent rect. 6 7
41 127.28 temperature 20 90 < th dose independent rect. 7 9
44 127.71 humidity 80 270 < th dose independent rect. 4 3
59 128.33 humidity 80 270 < th dose dependent rect. 4 3
84 129.12 temperature 20 30 < th dose independent rect. 6 2
134 130.39 wind 5 10 > th dose independent rect. 8 1
138 130.39 wind 5 10 > th dose dependent rect. 8 1
226 137.76 humidity 80 1440 > th dose independent rect. 4 2
254 138.73 wind 3 90 > th dose dependent rect. 5 2
268 139.05 wind 3 270 > th dose independent rect. 5 2
280 139.33 wind 3 90 > th dose dependent rect. 5 4
297 140.08 humidity 80 720 > th dose independent rect. 24 7
374 141.96 wind 7 90 > th dose independent rect. 1 8
377 141.96 wind 7 90 > th dose dependent rect. 1 8
416 142.63 wind 3 90 > th dose independent rect. 5 4
515 144.33 temperature 20 270 < th dose independent sin 1 NA
524 144.48 temperature 20 90 > th dose independent sin 0 NA
534 144.57 wind 5 10 > th dose independent rect. 24 9
571 144.95 temperature 25 10 < th dose dependent sin 1 NA
586 145.13 temperature 25 90 < th dose dependent sin 2 NA
589 145.16 wind 5 10 > th dose independent rect. 5 4
688 146.13 temperature 20 90 < th dose independent rect. 6 17
780 146.79 temperature 25 270 < th dose dependent rect. 3 18
803 146.89 temperature 15 30 > th dose dependent rect. 9 23
830 147.06 temperature 25 270 < th dose dependent rect. 3 20
836 147.09 wind 5 10 > th dose dependent rect. 5 4
849 147.14 temperature 25 270 < th dose dependent rect. 22 21
874 147.25 temperature 20 720 < th dose independent rect. 22 3
920 147.41 temperature 10 270 > th dose dependent sin 6 NA
932 147.46 radiation 10 10 < th dose independent rect. 8 1
945 147.51 temperature 20 720 < th dose independent rect. 22 1