Os01g0152500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, SWIM-type domain containing protein.
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Os01g0152500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, SWIM-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.77 | 0.639 | 4.53 | 2.11 | 0.741 | -0.855 | -0.406 | -2.56 | 1.14 | 8.44 | 1008 | 3966 | -- | -- |
| 200.58 | 0.66 | 4.58 | 1.58 | 0.752 | -0.799 | -0.189 | -- | 1.08 | 8.48 | 1008 | 4033 | -- | -- |
| 185.29 | 0.634 | 4.53 | 2.09 | 0.743 | -0.857 | -- | -2.53 | 1.14 | 8.41 | 1008 | 3944 | -- | -- |
| 200.7 | 0.66 | 4.58 | 1.56 | 0.742 | -0.802 | -- | -- | 1.07 | 8.4 | 1008 | 4047 | -- | -- |
| 215.92 | 0.684 | 4.55 | 2.09 | -- | -0.892 | -- | -2.52 | 1.14 | -- | 1008 | 3976 | -- | -- |
| 218.2 | 0.693 | 4.58 | 1.78 | 0.767 | -- | -0.241 | -- | 1.09 | 8.22 | -- | -- | -- | -- |
| 218.38 | 0.692 | 4.58 | 1.77 | 0.768 | -- | -- | -- | 1.09 | 8.18 | -- | -- | -- | -- |
| 231.23 | 0.708 | 4.6 | 1.55 | -- | -0.837 | -- | -- | 1.08 | -- | 1007 | 4095 | -- | -- |
| 248.12 | 0.734 | 4.67 | -- | 0.757 | -1.14 | -- | -- | 0.677 | 8.23 | 1008 | 9496 | -- | -- |
| 250.84 | 0.74 | 4.6 | 1.78 | -- | -- | -- | -- | 1.09 | -- | -- | -- | -- | -- |
| 301.4 | 0.812 | 4.62 | -- | 0.778 | -- | -- | -- | 0.887 | 8.01 | -- | -- | -- | -- |
| 249.55 | 0.736 | 4.68 | -- | -- | -1.17 | -- | -- | 0.753 | -- | 1012 | 30029 | -- | -- |
| 334.5 | 0.854 | 4.64 | -- | -- | -- | -- | -- | 0.896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 185.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 2 | 185.55 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 3 | 185.62 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 11 | 185.69 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 12 | 185.70 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 16 | 185.74 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 29 | 185.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 37 | 185.94 | temperature | 20 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 51 | 186.01 | temperature | 20 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 59 | 186.08 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 5 |
| 86 | 186.17 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 18 | 15 |
| 139 | 186.34 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 12 | NA |
| 145 | 186.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 165 | 186.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 202 | 186.48 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 203 | 186.48 | temperature | 20 | 43200 | < th | dose dependent | sin | 7 | NA |
| 215 | 186.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 232 | 186.52 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 236 | 186.52 | temperature | 20 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 239 | 186.53 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 245 | 186.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 249 | 186.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 305 | 186.63 | temperature | 30 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 319 | 186.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 342 | 186.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 396 | 186.72 | radiation | 1 | 43200 | < th | dose dependent | sin | 1 | NA |
| 414 | 186.73 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 441 | 186.75 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 442 | 186.75 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 520 | 186.82 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 523 | 186.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 524 | 186.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 556 | 186.86 | radiation | 1 | 43200 | < th | dose independent | sin | 0 | NA |
| 577 | 186.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 593 | 186.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 653 | 186.92 | atmosphere | 1010 | 4320 | > th | dose dependent | no | NA | NA |
| 678 | 186.94 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 690 | 186.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 716 | 186.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 770 | 186.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 773 | 186.99 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 786 | 186.99 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 872 | 187.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 23 |
| 874 | 187.01 | radiation | 1 | 43200 | > th | dose independent | sin | 1 | NA |
| 883 | 187.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 894 | 187.02 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 914 | 187.03 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 918 | 187.03 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 931 | 187.04 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 949 | 187.05 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 958 | 187.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 23 |