BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0152500 Os01g0152500|Os01g0152500
(856 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27110.1 | chr2:11576969-11580405 REVERSE LENGTH=852 67 4e-11
AT4G15090.1 | chr4:8614806-8617870 FORWARD LENGTH=828 65 2e-10
AT1G76320.1 | chr1:28631404-28633886 FORWARD LENGTH=733 63 6e-10
AT4G38170.1 | chr4:17904613-17906439 FORWARD LENGTH=546 62 1e-09
AT3G22170.1 | chr3:7822359-7825414 REVERSE LENGTH=840 60 4e-09
AT5G18960.1 | chr5:6330556-6333071 FORWARD LENGTH=789 57 3e-08
AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704 55 2e-07
AT3G06250.1 | chr3:1889771-1892065 REVERSE LENGTH=765 55 2e-07
AT5G28530.1 | chr5:10525078-10527300 REVERSE LENGTH=686 53 7e-07
AT2G32250.1 | chr2:13693518-13696783 FORWARD LENGTH=808 51 3e-06
AT4G19990.2 | chr4:10832848-10835559 FORWARD LENGTH=775 49 9e-06
>AT2G27110.1 | chr2:11576969-11580405 REVERSE LENGTH=852
Length = 851
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 488 CVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISAREGSGSNLESFRNDKDAAS 547
C C++FEH GILC HV+ V T ++P YILRRW+ +A+ + N D
Sbjct: 538 CSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHVSENGHD--- 594
Query: 548 SRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDALDEIKLVAGTNESPMGYTDPP 605
S HR+ L I +++G I+ +A+++A+ + + ++ +V +G PP
Sbjct: 595 SSIHRYNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVV----RKRIGRAAPP 648
>AT4G15090.1 | chr4:8614806-8617870 FORWARD LENGTH=828
Length = 827
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 488 CVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISAREGSGSNLESFRNDKDAAS 547
C C++FE+ G LC H + ++ G SIP +YIL+RW+ A+ G + D
Sbjct: 568 CFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVLAG-----EGADQIQ 622
Query: 548 SRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDAL 585
+R R+ L +LS++G +S + +++A++ + + L
Sbjct: 623 TRVQRYNDLCSRATELSEEGCVSEENYNIALRTLVETL 660
>AT1G76320.1 | chr1:28631404-28633886 FORWARD LENGTH=733
Length = 732
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 479 VDKDE--EDYKCVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISAREGSGSNL 536
VD DE D C C+ FE+ G LC H I V+ G +IP Y+L+RW+ +AR N
Sbjct: 492 VDWDEFKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTNAAR-----NR 546
Query: 537 ESFRNDKDAASSRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDALDE-------IK 589
+ + S R L I L ++G +S +++ +AM + +A + IK
Sbjct: 547 HQISRNLELVQSNIRRFNDLCRRAIILGEEGSLSQESYDIAMFAMKEAFKQCAVTINTIK 606
Query: 590 LVAGTNESPMGYTDPPNDEPAGPDQGGEQNEDPAAHQAVQSLPLPPD-RRAKRGRPRSTR 648
A E+ + DP +E + +P H ++P + RR KR +T
Sbjct: 607 HPARCEEAAIQAGDPVQEENQYGSTSTQIGPEPNIHAG--NVPWQAETRREKRSSLNNTS 664
Query: 649 LKS 651
K+
Sbjct: 665 KKA 667
>AT4G38170.1 | chr4:17904613-17906439 FORWARD LENGTH=546
Length = 545
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 475 NTVQVDKDEEDYKCVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISAREGSGS 534
+TV D E C C++FE+ GI+C H++ V + ++P +Y+LRRW+ A+
Sbjct: 345 HTVSFDSLEVKANCSCQMFEYSGIICRHILAVFSAKNVLALPSRYLLRRWTKEAKIRGTE 404
Query: 535 NLESFRNDKDAASSRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDALDEI--KLVA 592
F N S L ++G S+ + +AM DALDE K+ A
Sbjct: 405 EQPEFSN--GCQESLNLCFNSLRQEATKYVEEGAKSIQIYKVAM----DALDEAAKKVAA 458
Query: 593 GTNESPMGYTDPPNDEPAGPDQGGEQNEDPAAH 625
+N +P T PN E A P + + + H
Sbjct: 459 ASNRTPG--TRLPNGE-AYPSEEARETANATNH 488
>AT3G22170.1 | chr3:7822359-7825414 REVERSE LENGTH=840
Length = 839
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 451 HRTYTGLDFDPPSFDLNIDYSPSNNTVQVDKDEEDYKCVCKLFEHMGILCCHVIKVMTHI 510
+R T F F+ N D+ V ++ + + C+C+LFE+ G LC H + V+
Sbjct: 545 NRDATCSTFRVQDFENNQDF-----MVTWNQTKAEVSCICRLFEYKGYLCRHTLNVLQCC 599
Query: 511 GCRSIPDKYILRRWSISAREGSGSNLESFRNDKDAASSRTHRHTLLYHACIDLSKQGDIS 570
SIP +YIL+RW+ A+ F + +R R+ L + L+++ +S
Sbjct: 600 HLSSIPSQYILKRWTKDAKS------RHFSGEPQQLQTRLLRYNDLCERALKLNEEASLS 653
Query: 571 VDAFHLAMKHITDALDEIKLVAGTNESPMGYTDPPNDEPAGPDQG 615
+++++A I A+ AG N S G + P D P QG
Sbjct: 654 QESYNIAFLAIEGAIGN---CAGINTS--GRSLP--DVVTSPTQG 691
>AT5G18960.1 | chr5:6330556-6333071 FORWARD LENGTH=789
Length = 788
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 488 CVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISAREGSGSNLES 538
C C++FEH G+LC H++KV + R +P +YIL RW+ +A G ++ES
Sbjct: 687 CSCQMFEHEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDMES 737
>AT1G52520.1 | chr1:19565933-19568248 FORWARD LENGTH=704
Length = 703
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 487 KCVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISARE--GSGSNLESFRNDKD 544
+C+C F G LC H + V+ G IP +YIL RW + + + L F + D
Sbjct: 596 RCICSCFNFYGYLCRHALCVLNFNGVEEIPLRYILPRWRKDYKRLHFADNGLTGFVDGTD 655
Query: 545 AASSRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDALDEIKLV 591
R LY + + ++G +S+D + +AM+ + ++LD++ V
Sbjct: 656 ----RVQWFDQLYKNSLQVVEEGAVSLDHYKVAMQVLQESLDKVHSV 698
>AT3G06250.1 | chr3:1889771-1892065 REVERSE LENGTH=765
Length = 764
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 488 CVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISAREGSGSNLESFRNDKD 544
C C++FE+ G+LC H++KV + R +P +YIL RW+ +A G ++ES +D
Sbjct: 663 CSCQMFEYEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDVESGVTSQD 719
>AT5G28530.1 | chr5:10525078-10527300 REVERSE LENGTH=686
Length = 685
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 482 DEEDYKCVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRW 524
+ E+ +C CK FEH GILC H ++V+T C IP++Y L RW
Sbjct: 574 ENEEIQCSCKEFEHSGILCRHTLRVLTVKNCFHIPEQYFLLRW 616
>AT2G32250.1 | chr2:13693518-13696783 FORWARD LENGTH=808
Length = 807
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 474 NNTVQVDKDEEDYKCVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSISAREGSG 533
N V ++ + D C C LFE+ G LC H I V+ +P +YIL+RWS G
Sbjct: 498 NFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWS-----KKG 552
Query: 534 SNLESFRNDKDAA-SSRTHRHTLLYHACIDLSKQGDISVDAFHLAMKHITDAL 585
+N E +NDK A +R R L + L +S +A A+K + + +
Sbjct: 553 NNKED-KNDKCATIDNRMARFDDLCRRFVKLGVVASLSDEACKTALKLLEETV 604
>AT4G19990.2 | chr4:10832848-10835559 FORWARD LENGTH=775
Length = 774
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 469 DYSPSNNTVQV-DKDEEDYKCVCKLFEHMGILCCHVIKVMTHIGCRSIPDKYILRRWSIS 527
DY + + V V + + + C C+LFE G LC H + V+ G SIP +Y+L+RW+
Sbjct: 498 DYEQNRSFVVVWNSESSEVVCSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRWTKD 557
Query: 528 AREGSGSNLESFRNDKDAASSRTHRH 553
A+ S +ES + D S++ R+
Sbjct: 558 AK--SREVMES--DQTDVESTKAQRY 579
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,172,518
Number of extensions: 914608
Number of successful extensions: 2583
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2584
Number of HSP's successfully gapped: 11
Length of query: 856
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 749
Effective length of database: 8,173,057
Effective search space: 6121619693
Effective search space used: 6121619693
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)