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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0151400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Gamma-glutamyltranspeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.65 (0.0471) R2 : 0.79
β1 : 1.08 (0.174) R2dD : 0.0192 R2D : 0.0189
β2 : 3.22 (0.128) R2dC : 0.371 R2C : 0.6
β3 : -3.12 (0.196) R2dE : 0.164 R2E : 0.398
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.443 (0.102) R2dN8 : 0.0109 R2N8 : -0.0131
σ : 0.879
deviance : 355.94
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_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 30.31
memory length : 650
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.09
open length of G : 20.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.4 0.877 5.75 0.394 2.56 -4.16 3.38 8.9 0.412 13.1 30.32 666 9.02 20.2
357.05 0.88 5.68 1.07 3.27 -3.15 0.208 -- 0.436 12.8 30.4 658 9.13 20.9
365.6 0.891 5.68 0.762 3.18 -3.89 -- 6.04 0.493 12.7 30.4 657 8.93 21.4
355.94 0.879 5.65 1.08 3.22 -3.12 -- -- 0.443 12.9 30.31 650 9.09 20.9
508.9 1.05 5.78 1.47 -- -3.4 -- -0.002 0.146 -- 101.1 738 8.74 21.1
524.23 1.07 5.73 1.45 4.3 -- 0.00813 -- 0.162 13.7 -- -- -- --
524.23 1.07 5.73 1.45 4.3 -- -- -- 0.162 13.7 -- -- -- --
497.76 1.04 5.76 1.39 -- -3.53 -- -- 0.122 -- 256.1 746 9 20.2
386.73 0.916 5.66 -- 3.23 -3.2 -- -- 0.385 12.8 30.4 656 9.03 21
1653.23 1.9 5.78 1.28 -- -- -- -- 0.0668 -- -- -- -- --
579.88 1.13 5.77 -- 4.28 -- -- -- 0.000375 13.6 -- -- -- --
553.49 1.1 5.81 -- -- -3.52 -- -- -0.041 -- 270 747 9.02 20.2
1696.38 1.92 5.82 -- -- -- -- -- -0.0751 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 355.43 temperature 10 720 > th dose dependent rect. 4 14
2 356.48 temperature 10 720 > th dose dependent rect. 21 20
4 357.58 temperature 20 720 > th dose dependent rect. 21 20
5 358.17 temperature 15 270 > th dose dependent rect. 4 21
7 358.59 temperature 30 720 < th dose independent rect. 9 20
11 359.65 temperature 30 720 < th dose independent rect. 9 11
26 361.14 temperature 20 30 > th dose dependent rect. 23 23
37 361.89 temperature 30 720 < th dose independent rect. 1 20
81 364.68 temperature 30 720 > th dose independent rect. 14 3
91 365.33 temperature 30 720 < th dose independent rect. 14 15
99 365.81 temperature 20 270 > th dose dependent rect. 12 23
126 367.63 temperature 30 720 > th dose independent rect. 15 1
175 369.87 temperature 20 30 > th dose dependent no NA NA
178 370.07 temperature 10 720 > th dose dependent rect. 13 20
180 370.18 temperature 30 720 < th dose independent rect. 14 7
213 371.56 temperature 30 720 > th dose independent rect. 11 7
219 371.86 temperature 10 720 > th dose dependent rect. 12 23
283 373.22 temperature 30 720 < th dose independent rect. 14 23
287 373.29 temperature 20 10 > th dose dependent rect. 21 23
288 373.32 temperature 30 720 < th dose independent sin 19 NA
292 373.40 temperature 30 720 > th dose independent sin 19 NA
309 373.92 temperature 30 720 > th dose independent rect. 14 21
317 374.04 temperature 10 720 > th dose dependent sin 0 NA
386 374.87 temperature 30 30 < th dose dependent rect. 9 23
395 375.09 wind 9 43200 > th dose dependent rect. 20 1
414 375.48 temperature 30 720 > th dose dependent rect. 14 1
497 376.40 temperature 30 720 > th dose dependent rect. 12 5
503 376.45 temperature 20 14400 < th dose independent rect. 21 1
506 376.54 temperature 30 30 < th dose dependent rect. 7 23
508 376.57 wind 9 43200 > th dose independent rect. 20 1
580 377.76 temperature 30 720 > th dose independent no NA NA
688 377.82 temperature 25 1440 > th dose dependent rect. 15 4
707 378.13 temperature 30 720 < th dose independent no NA NA
745 378.23 temperature 10 720 > th dose dependent rect. 10 23
754 378.36 temperature 25 1440 > th dose dependent rect. 16 2
781 378.81 temperature 30 720 > th dose dependent sin 20 NA
837 379.48 temperature 30 720 > th dose dependent rect. 18 23
850 379.77 temperature 20 10 > th dose dependent rect. 2 23
906 380.07 temperature 30 720 > th dose dependent no NA NA